Plant FIBer expression Database

Potri.003G218100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G55280 304 / 1e-100 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039181
[exp]
340 / 2e-113 AT1G55280 296 / 5e-97 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
PFAM info
Representative CDS sequence
>Potri.003G218100.1 pacid=42784495 polypeptide=Potri.003G218100.1.p locus=Potri.003G218100 ID=Potri.003G218100.1.v4.1 annot-version=v4.1
ATGGAGTCTGCATCTCTAAAGCATGTAATCTTTACAAGAAATCAGTACAGTATCTTCTCGAAGAATCAAAGAAAACACCACCCACTCATCCCAAAAACTC
ATGTTAGGAGAAGATTTGGCTTTGGCAGCGTCAAAAACTACAAAAAATCAGATTTTCAAGATTTTCAGGGCTATGCAAAACCTTTGCATCTTTTGCCAGC
AACAGAAGTGAAAGTTTGTACAGAAACCTCACAAGAAAAGCTTCTTACATCTATCAAAGGATCTTGGTCTTTGTTCAAGGTTAAGCTATGTACAAGTAAT
GTCTATGGCTCAAGTCTGAGTGATCCTAATGCTGGAATACTCTTATGTTTGATAGACAGGAATGGTGACTCAATATTGCACAGAATACCTGCGATTTCAG
AGTCCAATTCTGCTAACTTGATGGACATGGTTGAGTCTGACACACTTCATTTCCAAAGAGGTTCAGTTGATGAATTCACCTTTGAGGGCCCCAAGATGGG
GAGGATCGAATCTCTTTGGGTCAGTGTTGAATCAGGTCAGTGGAGATTAGATGGTGTGAGCCTGACTGTCATTAGTGCTTCTCAAGCTTCCCCTGAAGAA
AATGATGGACAGGAGATCCGGTATACTGGTTGCCAGTATGAGTTTGAAACTGATGATGTTTTGCTTGGGGAGGGAAGTGACTTATCCATGGTGGAACTTA
GACCTTGCCATGTATCTGATTTATCTGGGGTTGATCCATCCACATTGTTGAGTAAAAGCCCTTCCATGTCAACCTCCCCACCTGGCAGCAACGTTTCTAA
CGAGGAAAGCATGAGAGAATATGCAGACTTGAAGTTATCTTTGTTATCCTATGATGCAATGCTAATTTTTGTGGGTACAACAATAACAGGTTTCTCAGCT
GGAGAAAATGCTGCTTTTGCTTTCTTTATCGGTGGAATTGGTGGCTTTTTATATTTGTTGCTGCTACAAAGGTCTGTCGATGGATTACCAGCTTCATCAA
TTCCCAGCAATACCAGTGGGTTCGATCGCCTAGTTGGAGGACTTAAGGGTCCAATATCAAGCTTGGCACTGGCTGTAGGGTTTACTTTTCTAGCAGTGAA
GTATAGCTCTGGCGATGCTCCCTCAGTGTTCACTCCAAAAGAACTTCTGGCTGGAATGTTGGGGTTCCTTGCGTGTAAAGTGGCTGTAGTATTGGCAGCA
TTTAAGCCTTTGAAACTGGATTTCAAGGAAAATGAGTAA
AA sequence
>Potri.003G218100.1 pacid=42784495 polypeptide=Potri.003G218100.1.p locus=Potri.003G218100 ID=Potri.003G218100.1.v4.1 annot-version=v4.1
MESASLKHVIFTRNQYSIFSKNQRKHHPLIPKTHVRRRFGFGSVKNYKKSDFQDFQGYAKPLHLLPATEVKVCTETSQEKLLTSIKGSWSLFKVKLCTSN
VYGSSLSDPNAGILLCLIDRNGDSILHRIPAISESNSANLMDMVESDTLHFQRGSVDEFTFEGPKMGRIESLWVSVESGQWRLDGVSLTVISASQASPEE
NDGQEIRYTGCQYEFETDDVLLGEGSDLSMVELRPCHVSDLSGVDPSTLLSKSPSMSTSPPGSNVSNEESMREYADLKLSLLSYDAMLIFVGTTITGFSA
GENAAFAFFIGGIGGFLYLLLLQRSVDGLPASSIPSNTSGFDRLVGGLKGPISSLALAVGFTFLAVKYSSGDAPSVFTPKELLAGMLGFLACKVAVVLAA
FKPLKLDFKENE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G55280 Lipase/lipooxygenase, PLAT/LH2... Potri.003G218100
[exp]
0 1
AT3G01920 DHBP synthase RibB-like alpha/... Potri.001G330100
[exp]
3.87 0.9199
AT1G17850 Rhodanese/Cell cycle control p... Potri.015G029600
[exp]
4.89 0.9408
AT2G45630 D-isomer specific 2-hydroxyaci... Potri.002G151200
[exp]
6.00 0.9239
AT4G21190 EMB1417 embryo defective 1417, Pentatr... Potri.017G148700
[exp]
6.78 0.9399
AT5G08340 Nucleotidylyl transferase supe... Potri.007G075500
[exp]
8.48 0.9282
AT2G31840 MRL7-L Mesophyll-cell RNAi Library li... Potri.007G145700
[exp]
12.36 0.9367
AT1G75380 ATBBD1 bifunctional nuclease in basal... Potri.002G032500
[exp]
20.04 0.9018
AT5G63040 unknown protein Potri.012G088700
[exp]
21.90 0.9065
AT3G04310 unknown protein Potri.010G063300
[exp]
25.39 0.9278
AT3G23560 ALF5 ABERRANT LATERAL ROOT FORMATIO... Potri.011G117300
[exp]
29.59 0.8883 Pt-HLS3.1

Potri.003G218100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.