Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09280 414 / 2e-145 Pectin lyase-like superfamily protein (.1) AT1G30350 309 / 4e-103 Pectin lyase-like superfamily protein (.1) AT1G67750 303 / 3e-100 Pectate lyase family protein (.1) AT1G11920 301 / 5e-100 Pectin lyase-like superfamily protein (.1) AT3G24230 303 / 9e-100 Pectate lyase family protein (.1) AT1G04680 302 / 1e-99 Pectin lyase-like superfamily protein (.1) AT3G07010 302 / 1e-99 Pectin lyase-like superfamily protein (.1) AT4G22080 299 / 7e-99 RHS14 root hair specific 14 (.1) AT4G22090 297 / 4e-98 Pectin lyase-like superfamily protein (.1) AT3G24670 296 / 6e-97 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007400 [exp] 644 / 0 AT5G09280 416 / 2e-146 Pectin lyase-like superfamily protein (.1) Potri.011G008000 [exp] 319 / 1e-106 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.004G007300 [exp] 317 / 5e-106 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.001G052300 [exp] 310 / 3e-102 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 305 / 2e-100 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 295 / 4e-97 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 294 / 6e-97 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 293 / 5e-96 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 293 / 7e-96 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031867 [exp] 359 / 3e-124 AT5G09280 277 / 1e-93 Pectin lyase-like superfamily protein (.1) Lus10018430 [exp] 317 / 1e-105 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011257 [exp] 314 / 1e-104 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011258 [exp] 309 / 2e-102 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 306 / 3e-101 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 306 / 5e-101 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 301 / 6e-99 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022310 [exp] 295 / 3e-97 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011758 [exp] 295 / 5e-97 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10023679 [exp] 296 / 7e-97 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.003G218200.1 pacid=42784650 polypeptide=Potri.003G218200.1.p locus=Potri.003G218200 ID=Potri.003G218200.1.v4.1 annot-version=v4.1 ATGGTTGTCTTAAGGCACCTTGTAGTAGTGGTCGTTTCTATTGCCATCCTTTCCTTCATCCCCAGTGCTTGTATTGCTGCCAACAAAATGAATGCCATAG ATCAATGTTGGAAACCGAGTCCGAATTGGCGAAGAAGCCGGCAACAACTGGCATCTTGTTCTGTAGGGTTTGCAGGGAAAATGACTAACAATGTTGGGAG AGATGTTGTAATGTATAAAGTCACCGATCCTAGTGATGACCCTGTGAACCCCAAACAAGGGACGTTAAGACATGGAGCCACCATGATCACAGGCAAAGTC TGGATCACTTTCGAAAGGAACATGGATATCAAACTTGAGAAACCTCTTCTTATTAGCAGCTATACTGCCATTGACGGTCGCGGTGTTGATGTTGGAATTG AAGGCTTCGGATGCTTCTTGGTGTACAAGGCAACGGACGTGATCATCCATGGCCTAAGGATTCACCATTGCAATGCACAAGGGCCTAGCACAGTCATGGG ACCAGATGGGAAACAAATGCAATTAGGTCAGATGGATGGGGATGCAATAAGGCTGGTCAGTGCATCTAAGATTTGGATAGATCACAACACACTGTATTCA TGCCAGGATGGTCTTCTTGATGTCACTCGAGGATCTACATTTGTTACTGTCTCTAACAATTGGTTTAGAGACCAAGACAAGGTCATGCTACTTGGCCATG ATGATGGGTTCTTGAGGGACAAGAACATGAAGGTCACTGTTGCCTTCAATCGTTTCGGACCTAATTGTAACCAGAGAATGCCAAGGATTCGCCATGGATA TGCACATGTAGCCAACAATCTGTACCGAGGATGGGAACAGTATGCGATTGGGGGAAGCATGAGTCCTAGCATCAAGAGCGAATCCAACTATTTTATTGCA CCAACATCAGGAAAGAAGGAGGTAACATGGAGAAATGGGATCGGTGGGAAAAGCAAGCCCTGGAACTTCTACTCCATAGGGGATCTGTTTACAAATGGAG CTTCATTTTTCCAAACAGGTCGCAGAGGTATGGCAAAGCCTAACTACAATAAGGAGCAAAGCTTCAAGGTTGGAGATGCCAAGTATGTGAAGGCATTGAC AAGCTCTGCAGGTGCTTTGAAGTGCTCAAGGACATCTAGATGCTGA
AA sequence Show only first row Show all	>Potri.003G218200.1 pacid=42784650 polypeptide=Potri.003G218200.1.p locus=Potri.003G218200 ID=Potri.003G218200.1.v4.1 annot-version=v4.1 MVVLRHLVVVVVSIAILSFIPSACIAANKMNAIDQCWKPSPNWRRSRQQLASCSVGFAGKMTNNVGRDVVMYKVTDPSDDPVNPKQGTLRHGATMITGKV WITFERNMDIKLEKPLLISSYTAIDGRGVDVGIEGFGCFLVYKATDVIIHGLRIHHCNAQGPSTVMGPDGKQMQLGQMDGDAIRLVSASKIWIDHNTLYS CQDGLLDVTRGSTFVTVSNNWFRDQDKVMLLGHDDGFLRDKNMKVTVAFNRFGPNCNQRMPRIRHGYAHVANNLYRGWEQYAIGGSMSPSIKSESNYFIA PTSGKKEVTWRNGIGGKSKPWNFYSIGDLFTNGASFFQTGRRGMAKPNYNKEQSFKVGDAKYVKALTSSAGALKCSRTSRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09280			Pectin lyase-like superfamily ...		Potri.003G218200 [exp]	0	1
					Potri.012G010900 [exp]	6.48	0.6158
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.013G153200 [exp]	7.41	0.6092
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Potri.014G054700 [exp]	10.58	0.5324
					Potri.001G134200 [exp]	37.78	0.4900
AT3G06240			F-box family protein (.1)		Potri.008G199601 [exp]	37.88	0.4791
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.008G077700 [exp]	43.26	0.5034	Pt-PNFT3.4
AT3G60650			unknown protein		Potri.002G144400 [exp]	43.43	0.4841
AT1G44414			unknown protein		Potri.002G083100 [exp]	43.49	0.4742
					Potri.015G051201 [exp]	57.13	0.4542
AT4G34770			SAUR-like auxin-responsive pro...		Potri.009G127400 [exp]	71.24	0.4347

Compare expression of checked genes

Potri.003G218200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.