Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30380 86 / 2e-22 EXLB2 Barwin-related endoglucanase (.1) AT2G18660 69 / 1e-15 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT2G45110 53 / 6e-09 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT5G39310 53 / 7e-09 ATHEXPALPHA1.19, ATEXP24, ATEXPA24 EXPANSIN 24, expansin A24 (.1) AT1G62980 52 / 9e-09 ATHEXPALPHA1.25, ATEXP18, ATEXPA18 EXPANSIN 18, expansin A18 (.1) AT4G01630 52 / 2e-08 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1) AT5G39280 51 / 3e-08 ATEXP23, ATHEXPALPHA1.17, ATEXPA23 EXPANSIN 23, expansin A23 (.1) AT1G12560 50 / 5e-08 ATHEXPALPHA1.26, ATEXP7, ATEXPA7 expansin A7 (.1) AT1G69530 50 / 5e-08 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT5G02260 50 / 7e-08 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098200 [exp] 131 / 3e-40 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.006G179300 [exp] 112 / 1e-32 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.018G101600 [exp] 111 / 3e-32 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.006G176300 [exp] 96 / 2e-26 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.006G252200 [exp] 84 / 9e-22 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.018G029100 [exp] 84 / 1e-21 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.018G031901 [exp] 80 / 8e-20 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.006G249500 [exp] 75 / 4e-18 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1) Potri.006G155000 [exp] 64 / 8e-14 AT2G18660 59 / 1e-11 plant natriuretic peptide A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042435 [exp] 133 / 1e-40 AT4G30380 101 / 2e-28 Barwin-related endoglucanase (.1) Lus10026232 [exp] 115 / 2e-33 AT4G30380 90 / 2e-23 Barwin-related endoglucanase (.1) Lus10019978 [exp] 96 / 2e-26 AT4G30380 162 / 8e-53 Barwin-related endoglucanase (.1) Lus10031759 [exp] 92 / 3e-24 AT2G18660 107 / 1e-30 plant natriuretic peptide A (.1) Lus10020130 [exp] 84 / 5e-21 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1) Lus10026930 [exp] 82 / 8e-20 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1) Lus10026931 [exp] 78 / 3e-18 AT4G30380 64 / 9e-13 Barwin-related endoglucanase (.1) Lus10030078 [exp] 74 / 2e-17 AT2G18660 84 / 3e-21 plant natriuretic peptide A (.1) Lus10013118 [exp] 72 / 6e-17 AT4G30380 67 / 5e-15 Barwin-related endoglucanase (.1) Lus10026929 [exp] 71 / 2e-16 AT2G18660 53 / 1e-09 plant natriuretic peptide A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.003G218300.1 pacid=42785795 polypeptide=Potri.003G218300.1.p locus=Potri.003G218300 ID=Potri.003G218300.1.v4.1 annot-version=v4.1 ATGGCATCCGTCTTCAAGAATTTCATTGCCTCTTCTGTTATGACATTGTTGTGTTTCAGTTTGTGCTTTTATCCATTCGCATTGGCTCAAGATTCAGGAA CTGCGACCTTCAACACACCCCCATACGTTCCTTCTAAATGCTATGGATATGAAGATCGAGGAGTGATGATTGCAGCAGCAAGTGAAGGGATTTTTAACAA TGGGGAAGCTTGTGGGCTATATTACCAAGTAACTTGTGTTAGCGGGACAAATGAGGGCACTCCATTCCCTTGTTTGGATAATGGGTCAGTTGTTGTGATG ATTACAGATCTTTGCCCTCCTGATTCTTGTAGGGGTACCATTGATTTGTCACAAGAAGCTTTTGCCTCCATTGCTGACCCCAATTCTGGCGTTATAAACA TCTCTTACCAACAGATTTGA
AA sequence Show only first row Show all	>Potri.003G218300.1 pacid=42785795 polypeptide=Potri.003G218300.1.p locus=Potri.003G218300 ID=Potri.003G218300.1.v4.1 annot-version=v4.1 MASVFKNFIASSVMTLLCFSLCFYPFALAQDSGTATFNTPPYVPSKCYGYEDRGVMIAAASEGIFNNGEACGLYYQVTCVSGTNEGTPFPCLDNGSVVVM ITDLCPPDSCRGTIDLSQEAFASIADPNSGVINISYQQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.003G218300 [exp]	0	1
AT4G16447			unknown protein		Potri.011G086300 [exp]	3.46	0.9626
AT1G34065		SAMC2	S-adenosylmethionine carrier 2...		Potri.002G063901 [exp]	5.74	0.7423
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.005G026950 [exp]	5.91	0.7995
AT1G22110			structural constituent of ribo...		Potri.005G169900 [exp]	6.70	0.7721
AT2G29620			unknown protein		Potri.009G043000 [exp]	7.21	0.7280
					Potri.013G104501 [exp]	7.34	0.8058
AT3G20190			Leucine-rich repeat protein ki...		Potri.004G170274 [exp]	16.43	0.6519
AT5G01680		ATCHX26	cation/H+ exchanger 26, ARABID...		Potri.016G127800 [exp]	16.49	0.6316	ATCHX27.1
AT4G27790			Calcium-binding EF hand family...		Potri.015G010300 [exp]	18.89	0.5660
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.004G001701 [exp]	76.34	0.5486

Compare expression of checked genes

Potri.003G218300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.