Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44130 185 / 4e-55 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G15670 181 / 7e-54 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G80440 169 / 1e-49 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G59940 162 / 5e-46 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 92 / 1e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 63 / 6e-11 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 61 / 5e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 60 / 8e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G03030 59 / 2e-09 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 58 / 3e-09 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007000 [exp] 595 / 0 AT1G15670 198 / 1e-60 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G196900 [exp] 418 / 4e-147 AT1G15670 211 / 7e-66 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178300 [exp] 202 / 3e-62 AT1G80440 362 / 2e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178500 [exp] 181 / 5e-54 AT1G15670 310 / 5e-104 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.007G147000 [exp] 177 / 9e-52 AT3G59940 300 / 4e-98 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G000700 [exp] 167 / 7e-48 AT3G59940 283 / 2e-91 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 95 / 2e-21 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 92 / 1e-20 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G221300 [exp] 72 / 1e-13 AT4G03030 496 / 9e-175 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016214 [exp] 341 / 2e-116 AT2G44130 206 / 7e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10029329 [exp] 339 / 1e-115 AT1G15670 195 / 3e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017300 [exp] 320 / 2e-108 AT1G15670 203 / 9e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013538 [exp] 303 / 3e-102 AT1G15670 192 / 7e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 90 / 1e-19 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10000704 [exp] 90 / 2e-19 AT4G03030 391 / 4e-131 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 89 / 2e-19 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10025357 [exp] 69 / 1e-12 AT1G22040 497 / 6e-174 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 67 / 4e-12 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 66 / 8e-12 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.003G218400.1 pacid=42786528 polypeptide=Potri.003G218400.1.p locus=Potri.003G218400 ID=Potri.003G218400.1.v4.1 annot-version=v4.1 ATGGAAACTACCATGTTCACCGAGTTGATCCCGAGTTTGCCTCAAGAACTCGGTCTTGAGTGCATGACTCGGCTGCCTTACACAGCTCACAGAGTTGCTT CCCAAGTTTGCAAGCAATGGTGTGACTTACTGGAAAGCAAGGATTTTTATTACCACAGGAAGAAACTTGGCTACACCCATAAAGTTGCTTGTCTTGTTCA AGCTGTTCACGGGGCTGATGTTTTACAGGGATCCAAACAAGGTAACTCACCGTGTTTTGGGATCTCTGTGTTTGACTCAGCGAGTCAGACATGGGAGAGA CTCGACCCGGTGCCCAATTATCCGATCGAGTTGCCCTTGTTTTGTCAATTGGCAAGCTGTGAAGGGAAGCTCGTGGTCATGGGTGGGTGGGACCCGGTGA GTTATGAACAGGTGAGTCATGTTTTTGTGTATGATTTCACAACAAGGAAGTGGAGAGAGGGGAAGGAGATGCCTTCCAAGAGGTCCTTTTTTGCTATCGG GTCCTATTCAGGTCGGGTTTATGTCGTGGGCGGGCATGATGAGAATAAGAATGCATTAAGAACTGGGTGGGTTTATGATTTGAGCAAGGATGAGTGGACT GAGTTAGCTCAAATGAGTCAAGAGCGAGATGAGTGTGAGGGAGTGGTGATCGGGGATGAGTTTTGGGTGGTCAGCGGATATGGGACCGATAATCAGGGGG CATTTGAGGGGAATGCTGAGGTATATGAATTCGGGTCGGGTCAATGGAGGCAGGTGAAGAAGGCATGGATTCCGGGCCGGTGCCCGAGATCTTGTGTTGG GGTAGGGAAAGATGGGAGATTGATGAGTTGGGCTGACTTGGACCCGATGGTTCGAGCCGGGGTTCGTGGGATCCCGTTGGGCTCTCGGGTCATGCTTACC GGGTTGGATAACCAAGGTTCACCCGAAGAGTTCTATTTGATAGAAATGAAAGATGGTCAAAATGGGAAATTGGAGAAGATCATTGTGCCTGATGAGTTCT CAGGGTTTGTTCAATCTGGCTGCTGCGTGGAGATCTAA
AA sequence Show only first row Show all	>Potri.003G218400.1 pacid=42786528 polypeptide=Potri.003G218400.1.p locus=Potri.003G218400 ID=Potri.003G218400.1.v4.1 annot-version=v4.1 METTMFTELIPSLPQELGLECMTRLPYTAHRVASQVCKQWCDLLESKDFYYHRKKLGYTHKVACLVQAVHGADVLQGSKQGNSPCFGISVFDSASQTWER LDPVPNYPIELPLFCQLASCEGKLVVMGGWDPVSYEQVSHVFVYDFTTRKWREGKEMPSKRSFFAIGSYSGRVYVVGGHDENKNALRTGWVYDLSKDEWT ELAQMSQERDECEGVVIGDEFWVVSGYGTDNQGAFEGNAEVYEFGSGQWRQVKKAWIPGRCPRSCVGVGKDGRLMSWADLDPMVRAGVRGIPLGSRVMLT GLDNQGSPEEFYLIEMKDGQNGKLEKIIVPDEFSGFVQSGCCVEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44130			Galactose oxidase/kelch repeat...		Potri.003G218400 [exp]	0	1
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Potri.013G061200 [exp]	1.00	0.8887
AT5G59080			unknown protein		Potri.009G038300 [exp]	3.16	0.8293
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Potri.006G013900 [exp]	3.46	0.8585
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.001G041800 [exp]	4.89	0.8586
AT2G35390			Phosphoribosyltransferase fami...		Potri.003G088400 [exp]	7.48	0.8318
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036466 [exp]	11.22	0.8083
AT3G22550			Protein of unknown function (D...		Potri.002G050800 [exp]	13.41	0.7772
AT4G28240			Wound-responsive family protei...		Potri.019G116300 [exp]	14.14	0.7650
AT2G46110		PANB1, KPHMT1	ketopantoate hydroxymethyltran...		Potri.014G090500 [exp]	15.96	0.7784
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.017G101700 [exp]	17.29	0.7661

Compare expression of checked genes

Potri.003G218400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.