Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55300 244 / 7e-83 TAF7 TBP-associated factor 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006300 [exp] 262 / 8e-90 AT1G55300 247 / 5e-84 TBP-associated factor 7 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017011 [exp] 214 / 5e-71 AT1G55300 274 / 1e-94 TBP-associated factor 7 (.1.2) Lus10021337 [exp] 210 / 1e-69 AT1G55300 256 / 1e-87 TBP-associated factor 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0662 [poplar] [flax] Triple_barrel PF04658 [poplar] [flax] TAFII55_N TAFII55 protein conserved region
Representative CDS sequence Show only first row Show all	>Potri.003G218700.1 pacid=42786492 polypeptide=Potri.003G218700.1.p locus=Potri.003G218700 ID=Potri.003G218700.1.v4.1 annot-version=v4.1 ATGGAGGAACAGTTTATACTAAGAGTTACACCTTCTATTGCGGAGAAGTTAGATCGACTTTTGAGTGACACTGCTTCTTCTTCTGAAGAACAATCATTGG ATTTGTCTTTTTCTGAGGATGGAAGGGGTGGCACATTTGTCATTGGAAACGAACATTTCCCTGCATCTCTCTTGGATCTTCCTTGTGTTGTAGAGTCCTA CAAAACGTATGACGATTGTGCGCTAGTTAAAACTGCAGACATTGGTCAAATGATTATGGTTAGAGAAGCAGGTGATACTGTTCCAGATGTGGTGGAGTAC AGACATGGGCTCACTCCTCCTATGAGGGATGCTCGAAAGAGAAGATTTCGTAGGGAGCCATACCTCAATCCCGAGCTTGTACAGCGTGTTGAGAAAGATC TTCTGAACATCATGGCCGGGGGCACAGTCGAAAATGCTGAAGCTGAAGCTAATGAGCAAGAGGAAGACGGTGAACAGAATGCTCGTAAAGCAAATAAGAA ACCTGAGCCTGCTCCTGAAGCAAAGCCTGATGTACCAGAAACAACAGCTAATGCAGAAGAACCTGAGAGAAGTGATTCAGATGAGTCCGATGATTCGATG TAA
AA sequence Show only first row Show all	>Potri.003G218700.1 pacid=42786492 polypeptide=Potri.003G218700.1.p locus=Potri.003G218700 ID=Potri.003G218700.1.v4.1 annot-version=v4.1 MEEQFILRVTPSIAEKLDRLLSDTASSSEEQSLDLSFSEDGRGGTFVIGNEHFPASLLDLPCVVESYKTYDDCALVKTADIGQMIMVREAGDTVPDVVEY RHGLTPPMRDARKRRFRREPYLNPELVQRVEKDLLNIMAGGTVENAEAEANEQEEDGEQNARKANKKPEPAPEAKPDVPETTANAEEPERSDSDESDDSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.003G218700 [exp]	0	1
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Potri.005G221600 [exp]	1.00	0.8338	BET11.1
AT5G58575			unknown protein		Potri.001G279700 [exp]	1.41	0.8254
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Potri.017G018400 [exp]	2.00	0.7855
AT3G29130			unknown protein		Potri.011G098200 [exp]	2.44	0.7778
AT1G77370			Glutaredoxin family protein (....		Potri.007G017300 [exp]	3.00	0.7982	PtrcGrx_C3
AT3G25120			Mitochondrial import inner mem...		Potri.002G246000 [exp]	6.00	0.7494
AT1G55880			Pyridoxal-5'-phosphate-depende...		Potri.001G367000 [exp]	7.41	0.7381
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Potri.012G104100 [exp]	8.48	0.7109
AT5G55640			unknown protein		Potri.001G367200 [exp]	12.64	0.7729
AT5G05670			signal recognition particle bi...		Potri.002G020900 [exp]	13.41	0.7470

Compare expression of checked genes

Potri.003G218700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.