Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13600 733 / 0 calmodulin-binding family protein (.1) AT3G58480 567 / 0 calmodulin-binding family protein (.1) AT2G26190 417 / 3e-139 calmodulin-binding family protein (.1) AT4G33050 414 / 1e-138 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) AT5G57010 390 / 4e-129 calmodulin-binding family protein (.1) AT3G52870 344 / 7e-112 IQ calmodulin-binding motif family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006200 [exp] 1016 / 0 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.006G197500 [exp] 653 / 0 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 595 / 0 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1) Potri.001G005600 [exp] 542 / 0 AT3G13600 431 / 4e-148 calmodulin-binding family protein (.1) Potri.018G061901 [exp] 458 / 5e-155 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G226400 [exp] 433 / 2e-145 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 392 / 3e-129 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.006G114700 [exp] 354 / 2e-115 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1) Potri.006G226500 [exp] 321 / 2e-104 AT4G33050 433 / 9e-151 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039178 [exp] 755 / 0 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10013759 [exp] 747 / 0 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10025173 [exp] 679 / 0 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10016052 [exp] 677 / 0 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10016219 [exp] 524 / 5e-180 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1) Lus10029324 [exp] 441 / 2e-149 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10013526 [exp] 407 / 6e-135 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1) Lus10014872 [exp] 402 / 5e-133 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Lus10003257 [exp] 357 / 3e-117 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10035595 [exp] 357 / 4e-116 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G218800.1 pacid=42785502 polypeptide=Potri.003G218800.1.p locus=Potri.003G218800 ID=Potri.003G218800.1.v4.1 annot-version=v4.1 ATGGGAATATCCTTGTCCTGCCCATTTTCTGAGTACGGCGATGTGGATACTGGCTTAGAATCTGTTATTGTAAAATCCATCAGCTTTGGAGACAATGAAG CCAAAACTCCGGTACGATCAGTTAGTTTTGGCAGTCAAGATTTTGAGCCTACAATATTGAAGTCTTTAGGTTCTGGGAAGATGGTAGTAGAAAGATCTGT TAGTTTTAAAGGAGGAGAATTGGAAAGAATGGTGTCTATTAGAGCTTCTCCACTAGACAAAGAAAAAGATGCCTCCACAAAGTTGGTTAGCATAAACAGC AAAGAGATGGATAACCAGTCCGTAATCTCAGATGATAGTTTGGAGACGATACGAAAGTTGGCAATTTTTGATCCCACCAGCCCCAAACACCAGGCTGCTG TAAAATTGCAGAAAGTGTACAAGAGCTTCCGAACCAGGAGAAAGCTCGCAGATTGTGCAGTTCTTGTTGAGCAGAGCTGGTGGAAACTCTTAGATTTTGC TGAACTCAAGCGGAGTTCTATTTCATTCTTTGACATTGAGAAACACGAGTCTGCCATTTCTCGATGGTCAAGAGCAAGAACAAGAGCTGCAAAGGTTGGA AAAGGCTTATCAAAGAACGATAAGGCACAAAAACTTGCTTTACAACACTGGCTTGAAGCGATTGACCCACGGCATCGATATGGGCATAATCTTCATTTCT ATTACCTTAAATGGCTTCATTCCAAAAGCAGAGAACCCTTTTTTTACTGGTTAGATATAGGAGAAGGCAAGGAAGTGAATCTTGAAAAATGCCCTCGATC AAAACTTCAACAACAGTGCATCAAGTATCTTGGTCCGATGGAAAGAAAGGCCTATGAAGTTGTTATAGAGGATGGGAAACTTCTCTATAAGGAGTCAAGG GAGCTTCTCCACACCACAGAAGATGCTAAGTGGATTTTTGTTCTCAGCACCTCTATGAACTTGTATATTGGCAAGAAGCTGAAAGGCAAGTTTCAGCATT CTAGCTTCTTGGCTGGTGGAGTCGCAACTGCTGCTGGTAGATTAGTGGTTGAAGGTGGAGTTCTTAAGGCAGTTTGGCCTCACAGTGGTCATTATCGGCC TACAGAAGAAAACTTTCAGGACTTCCTTTCATTCCTCAGAGAAAACAATGTTGATCTCACAGATGTGAAGACAAGTCCTACGGACGAGGAAGACAATGCT CTTTACAAACAAAGAAGCAGCAAACACCTTAGAAACAACTCATCAGATGAGGATTTGAGTCAAGCAGTGAATGATTTAGAAACTGAGGAAATCAATGTTC AAGAAATGACTCCTGAAAATACCGATTCTGTTGAAGAAGAGACTTCTTCAGTAGTAGAAAAGCAGAGGTCAAGGCGACTCAGCAACTTTAGTAGAATATT GTCCAATCTTGAAGTGCCAGAAAAGAGTGAATTGGTTGAGAAAATGGAAAGTGAAAATCATATGGTTGGATCACGCGTCAGTAATACATCTTCTCCGGTG GAAGATGGTTATGAATCGGCAGAAGAAGGATTAGGTACAGAACAGCATTCCTTGGAGCCGAATGACAACTTGTTTGATGAAGAACAAGGGGAAGATGAAC AAAATGTTCCCGATGAAGCGATCATTGAAAGGATTAATTCTAAGAAAGGAATCGCGTCATATCAACTGGGGAAGCAGTTGTCTTGCAAATGGACAACGGG AGCTGGACCGCGGATTGGCTGTGTAAGGGACTACCCTTCAGAACTTCAGTTCCGGGCTTTGGAGCAAGTGAACTTGTCTCCAAGAAGCTTTCTCCATTCA AGAAGCACTGGTTTAATGAATCGTAAGGTGTCCACACCGACTACTAATTTTAGCGGAGAATTAAGACCGATTACAGGCTTACCAGTGGTAGCAGGGGAGG AAGTTTTGCAAAGAACACATCCCCTTTCTAAAGCACAATCATTGCCTCATGGGCTTCAGTAG
AA sequence Show only first row Show all	>Potri.003G218800.1 pacid=42785502 polypeptide=Potri.003G218800.1.p locus=Potri.003G218800 ID=Potri.003G218800.1.v4.1 annot-version=v4.1 MGISLSCPFSEYGDVDTGLESVIVKSISFGDNEAKTPVRSVSFGSQDFEPTILKSLGSGKMVVERSVSFKGGELERMVSIRASPLDKEKDASTKLVSINS KEMDNQSVISDDSLETIRKLAIFDPTSPKHQAAVKLQKVYKSFRTRRKLADCAVLVEQSWWKLLDFAELKRSSISFFDIEKHESAISRWSRARTRAAKVG KGLSKNDKAQKLALQHWLEAIDPRHRYGHNLHFYYLKWLHSKSREPFFYWLDIGEGKEVNLEKCPRSKLQQQCIKYLGPMERKAYEVVIEDGKLLYKESR ELLHTTEDAKWIFVLSTSMNLYIGKKLKGKFQHSSFLAGGVATAAGRLVVEGGVLKAVWPHSGHYRPTEENFQDFLSFLRENNVDLTDVKTSPTDEEDNA LYKQRSSKHLRNNSSDEDLSQAVNDLETEEINVQEMTPENTDSVEEETSSVVEKQRSRRLSNFSRILSNLEVPEKSELVEKMESENHMVGSRVSNTSSPV EDGYESAEEGLGTEQHSLEPNDNLFDEEQGEDEQNVPDEAIIERINSKKGIASYQLGKQLSCKWTTGAGPRIGCVRDYPSELQFRALEQVNLSPRSFLHS RSTGLMNRKVSTPTTNFSGELRPITGLPVVAGEEVLQRTHPLSKAQSLPHGLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13600			calmodulin-binding family prot...		Potri.003G218800 [exp]	0	1
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270500 [exp]	5.09	0.8603
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014600 [exp]	6.00	0.8667
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270404 [exp]	7.54	0.8556
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.002G158000 [exp]	10.67	0.8336
AT2G17705			unknown protein		Potri.005G107700 [exp]	11.18	0.8379
AT1G68710			ATPase E1-E2 type family prote...		Potri.010G132700 [exp]	13.11	0.8395
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.002G114500 [exp]	14.14	0.8218
AT4G30230			unknown protein		Potri.010G218300 [exp]	27.65	0.8200
AT1G74360			Leucine-rich repeat protein ki...		Potri.015G061600 [exp]	30.00	0.8200
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	30.16	0.8222

Compare expression of checked genes

Potri.003G218800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.