Plant FIBer expression Database

Potri.003G219200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G08810 451 / 1e-155 SUB1 calcium ion binding (.1)
AT2G04280 238 / 2e-72 unknown protein
AT4G12700 230 / 1e-69 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G005500
[exp]
608 / 0 AT4G08810 762 / 0.0 calcium ion binding (.1)
Potri.014G170200
[exp]
245 / 4e-75 AT2G04280 862 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039176
[exp]
536 / 0 AT4G08810 845 / 0.0 calcium ion binding (.1)
Lus10013761
[exp]
533 / 0 AT4G08810 836 / 0.0 calcium ion binding (.1)
Lus10039175
[exp]
247 / 1e-79 AT4G08810 463 / 5e-163 calcium ion binding (.1)
Lus10036415
[exp]
229 / 2e-66 AT2G04280 828 / 0.0 unknown protein
Lus10041091
[exp]
187 / 4e-54 AT2G04280 745 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G219200.1 pacid=42787092 polypeptide=Potri.003G219200.1.p locus=Potri.003G219200 ID=Potri.003G219200.1.v4.1 annot-version=v4.1
ATGAAAGAAACCAATCTAGGAGCTGATCATATAGGGCAGAAACTGATAAAGTTGACAAGTAATTTATGCTTCTCAGTGTTTGTGGTCTCAGTTTTGATAT
TTACTGTTACTGGAATCACTTACCAACCACCAAATCCATGGCTGGAATCAGCTCCAGCTTTCACAAAACTCCTTACACAAACTGAGAATGCCACTTTTAA
AATTGATGATTCTGTTGTCAAAACTGGTGAGGATTTGCAAACTGGGACTGCCCCTGCTGTCCCTCCTCCTGCTGATATCAAGCCGATTACTGAGGAGGTG
GTCAAGAAAAAGGAGGAGGCAGTGAGCGATATGACCCTCAAGTCATCTGGTCGTGAGGATTTGGAGGTAGTGAATTGTTCGGATCCAAAGGTTTGGATTA
CGGTTGAGAAGTTCAATTTGTGGCTGTTTAAGTCAGTTGTGTTTTTGGATTATCCAACTCTGGTTAATGGATCGAAGCAGGATGAGTGTGACGTGTCATG
GACGAAGTATTGGGATTTTAGGAGGTTTAAGTTTGTAATTGAAGAGAATTGTTCTTACAAAATTGTGCATGCTGATGGTTGGCATTCTGGTTTCAACGCC
AGAAGGATTAGAGTTAATTCCTCCAGGAGTGGTAGAAATAATCCGAAAGTTGCACCATTGGTTCAGGACAATGAGATAAATGAGACAATCCCAAGATTGG
GATCAGAAACGAACTTTAGAAATGGGAAGACATTTGTCATGGACTTGAGCATGTGCTTGGGAGGAGGGGACGATTTTAGGTTTTATTTTGATTTTGAGCA
TCTTAAGGAGGCGGCGTCAATTGCCGAAGAGGGTGAATTTTTGAGAGATTGGAAGAAATGGAATCGCTCCCGTAGGAAGAAAGTTCCAGTTAAGAAGGTT
GTGGCCCATAAGATGACACCAATGCAACCAAGGAAAGTTAAGAGCACAATCATATGGAGGCAGTTTGATGGTCAGGAGCCAGAAAATTATTGGCATAGGA
TGTGTGAATGGCGGGCTGCAAAGTACATTCAGAGACCGTGGCATGCAGTTTGTGGGAGAATGGACTGGGATTTTGGGATGATTCAACCTTGGAGGAATCT
GTATATAGCAACCAATGAGCCATTCTACAATTACTTTGATAAATTGAGGTCTCACTTCAAGGTCCATTTAATTGTTGACTTTGACGGATACATGAGAGTT
GCTGTGGATACTGAGGTTCTTTACAAAGCAAAAACTCGCGTGGAAACATTTTATAACTTGACCAGTGACTGCAAGGATGGAATCAATACATGCTAG
AA sequence
>Potri.003G219200.1 pacid=42787092 polypeptide=Potri.003G219200.1.p locus=Potri.003G219200 ID=Potri.003G219200.1.v4.1 annot-version=v4.1
MKETNLGADHIGQKLIKLTSNLCFSVFVVSVLIFTVTGITYQPPNPWLESAPAFTKLLTQTENATFKIDDSVVKTGEDLQTGTAPAVPPPADIKPITEEV
VKKKEEAVSDMTLKSSGREDLEVVNCSDPKVWITVEKFNLWLFKSVVFLDYPTLVNGSKQDECDVSWTKYWDFRRFKFVIEENCSYKIVHADGWHSGFNA
RRIRVNSSRSGRNNPKVAPLVQDNEINETIPRLGSETNFRNGKTFVMDLSMCLGGGDDFRFYFDFEHLKEAASIAEEGEFLRDWKKWNRSRRKKVPVKKV
VAHKMTPMQPRKVKSTIIWRQFDGQEPENYWHRMCEWRAAKYIQRPWHAVCGRMDWDFGMIQPWRNLYIATNEPFYNYFDKLRSHFKVHLIVDFDGYMRV
AVDTEVLYKAKTRVETFYNLTSDCKDGINTC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G08810 SUB1 calcium ion binding (.1) Potri.003G219200
[exp]
0 1
AT3G05950 RmlC-like cupins superfamily p... Potri.011G162932
[exp]
1.41 0.8643
AT2G35910 RING/U-box superfamily protein... Potri.006G201500
[exp]
2.00 0.8617
AT1G26690 emp24/gp25L/p24 family/GOLD fa... Potri.018G145544
[exp]
13.19 0.8528
AT5G45420 MYB maMYB membrane anchored MYB, Duplica... Potri.001G147000
[exp]
20.68 0.8503
AT5G53560 B5#2, ATB5-A, A... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.014G167550
[exp]
21.00 0.8385
AT5G52830 WRKY ATWRKY27, WRKY2... ARABIDOPSIS THALIANA WRKY DNA-... Potri.017G149000
[exp]
21.44 0.7959
AT3G05950 RmlC-like cupins superfamily p... Potri.011G163200
[exp]
21.54 0.8116 Pt-GER2.29
AT1G03820 unknown protein Potri.007G137001
[exp]
26.73 0.8492
Potri.001G052800
[exp]
27.49 0.8142
AT1G64385 unknown protein Potri.003G139400
[exp]
31.93 0.7663

Potri.003G219200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.