Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11950 300 / 9e-105 LOG8 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) AT2G28305 294 / 3e-102 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT2G37210 289 / 3e-100 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT3G53450 285 / 7e-99 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT2G35990 277 / 1e-95 LOG2 LONELY GUY 2, Putative lysine decarboxylase family protein (.1.2.3) AT5G06300 273 / 4e-94 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT4G35190 270 / 2e-92 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT5G03270 234 / 1e-78 LOG6 LONELY GUY 6, lysine decarboxylase family protein (.1) AT5G26140 169 / 5e-54 ATLOG9 LONELY GUY 9, Putative lysine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G005400 [exp] 367 / 2e-131 AT5G11950 268 / 5e-92 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) Potri.006G226100 [exp] 311 / 6e-109 AT5G11950 362 / 6e-129 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) Potri.009G060300 [exp] 301 / 3e-105 AT2G28305 315 / 3e-110 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.016G090500 [exp] 299 / 4e-104 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.006G127400 [exp] 296 / 7e-103 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.009G010800 [exp] 292 / 1e-101 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.004G212200 [exp] 290 / 9e-101 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.006G204800 [exp] 286 / 4e-99 AT5G06300 316 / 9e-111 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.001G265300 [exp] 283 / 5e-98 AT2G28305 288 / 9e-100 LONELY GUY 1, Putative lysine decarboxylase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026131 [exp] 304 / 3e-106 AT5G11950 350 / 4e-124 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) Lus10026513 [exp] 295 / 2e-102 AT2G37210 394 / 1e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10016096 [exp] 294 / 3e-102 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10021462 [exp] 293 / 5e-102 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10002226 [exp] 283 / 1e-97 AT2G37210 379 / 2e-135 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10022638 [exp] 279 / 6e-96 AT4G35190 365 / 2e-129 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10003335 [exp] 278 / 1e-95 AT4G35190 359 / 2e-127 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10012436 [exp] 277 / 2e-95 AT5G06300 332 / 7e-117 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10024328 [exp] 276 / 4e-95 AT5G06300 328 / 2e-115 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10025117 [exp] 276 / 8e-95 AT4G35190 373 / 1e-132 LONELY GUY 5, Putative lysine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0349 [poplar] [flax] SLOG PF03641 [poplar] [flax] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Potri.003G219300.1 pacid=42785677 polypeptide=Potri.003G219300.1.p locus=Potri.003G219300 ID=Potri.003G219300.1.v4.1 annot-version=v4.1 ATGGGAAAGTTCAAAAGTGTTTGTGTCTTTTGTGGAAGCAAGTCAGGGAATAAAAAGATATTCAGTGATGCAGCCCTTGATCTTGGAAGGGAGCTGGTTG AAAGGAAGATGGATTTAGTGTATGGAGGAGGGAGTATTGGACTGATGGGGCTTGTTTCTCAGACTGTTTATGATGGTGAATGCCATGTCTTAGGTGTTAT CCCAAGAGCTCTTGTACCGATTGAGATTTCAGGTCACACAGTTGGAGAAGTGTTGATTGTATCCGATATGCATGAAAGGAAGGCTGAGATGGCTCGGCGA GCTGATGCTTTCATTGCTCTTCCTGGAGGGTATGGAACCTTTGAGGAGTTGCTTGAGATGATAACATGGTCTCAGCTTGGAATCCATAACAAGCCAGTGG GTCTATTAAATGTTGATGGGTACTATGATAGCTTGCTTGGGTTTTTTGACAAAGGCGTAGAAGAAGGATTTATTGGACCTTCAGCCAGGAACATTGTCAT ATCTGCAAGGACGGCTACAGAGCTAATCCAGAAAATGGAGGATTATATACCTCTCCATGAACAAGTAGCACCAAGTCATAGCTGGAAAGTAGAAGGATGC AATGGAAATTTGTAG
AA sequence Show only first row Show all	>Potri.003G219300.1 pacid=42785677 polypeptide=Potri.003G219300.1.p locus=Potri.003G219300 ID=Potri.003G219300.1.v4.1 annot-version=v4.1 MGKFKSVCVFCGSKSGNKKIFSDAALDLGRELVERKMDLVYGGGSIGLMGLVSQTVYDGECHVLGVIPRALVPIEISGHTVGEVLIVSDMHERKAEMARR ADAFIALPGGYGTFEELLEMITWSQLGIHNKPVGLLNVDGYYDSLLGFFDKGVEEGFIGPSARNIVISARTATELIQKMEDYIPLHEQVAPSHSWKVEGC NGNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Potri.003G219300 [exp]	0	1
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011000 [exp]	4.00	0.7588
AT3G12830			SAUR-like auxin-responsive pro...		Potri.007G067800 [exp]	4.89	0.6501
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011300 [exp]	4.89	0.7480
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.004G182000 [exp]	8.83	0.7318	CHIA5.3
AT5G66390			Peroxidase superfamily protein...		Potri.005G118700 [exp]	11.31	0.7192
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G018500 [exp]	13.26	0.6796
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.008G166000 [exp]	13.41	0.7078
AT5G06730			Peroxidase superfamily protein...		Potri.001G012901 [exp]	17.14	0.6878
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.006G234200 [exp]	19.33	0.6279
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G013000 [exp]	20.78	0.6765

Compare expression of checked genes

Potri.003G219300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.