Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19850 506 / 3e-180 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 154 / 1e-43 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38520 151 / 4e-42 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G25290 112 / 8e-27 DNA photolyases;DNA photolyases (.1) AT5G13800 100 / 6e-23 CRN1, PPH Co-regulated with NYE1, pheophytinase (.1.2) AT4G12830 77 / 2e-15 alpha/beta-Hydrolases superfamily protein (.1) AT1G80280 76 / 2e-14 alpha/beta-Hydrolases superfamily protein (.1) AT1G15490 63 / 2e-10 alpha/beta-Hydrolases superfamily protein (.1) AT1G52750 61 / 1e-09 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 56 / 2e-08 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063900 [exp] 170 / 7e-49 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G121000 [exp] 154 / 6e-43 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.015G129500 [exp] 119 / 4e-29 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.009G054800 [exp] 103 / 6e-24 AT5G13800 610 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Potri.001G174900 [exp] 73 / 1e-13 AT1G80280 828 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059400 [exp] 72 / 3e-13 AT1G15490 845 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G175700 [exp] 67 / 6e-12 AT4G12830 545 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G062700 [exp] 57 / 5e-09 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G158800 [exp] 55 / 3e-08 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025172 [exp] 514 / 2e-169 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016051 [exp] 297 / 4e-90 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10003969 [exp] 163 / 3e-46 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028315 [exp] 157 / 3e-44 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041763 [exp] 142 / 2e-38 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031137 [exp] 120 / 2e-29 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10019755 [exp] 103 / 1e-23 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10005320 [exp] 100 / 5e-23 AT5G13800 551 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10016369 [exp] 84 / 2e-17 AT5G13800 483 / 2e-168 Co-regulated with NYE1, pheophytinase (.1.2) Lus10031716 [exp] 74 / 7e-14 AT4G25290 700 / 0.0 DNA photolyases;DNA photolyases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.003G219700.1 pacid=42784956 polypeptide=Potri.003G219700.1.p locus=Potri.003G219700 ID=Potri.003G219700.1.v4.1 annot-version=v4.1 ATGGCAAGCACCACTTCTCTAACACTACCCTCGACAAAACTAGAACTCCCATTTCTATCCCCACAAAGAAAAAACTGTAGCAGGAGCTTCAGCACTACAA CAACAGTGTCGTCACCAGTCTTCCGGCCTCCCCCTTTTACCAATAAAATCCATTTTCACAGTAACTCCAGCAGTGTTTCTCATTCAATCTCGAAAATCCC TGGTCTTCAATCAAATGGGTTTTTAGTACATTCCTCTTCGAGTGATTATTCAGTCAATAACAGTCAAATTGATGTGGAGAATAGCAGTTCATCAAATGAT GGAGCCAATGAAACTCAAGTCCAAAGCAGTATTTGGAGCTGGAAGGGTTATTCTATTCGCTATCAGTATGCTGGGAACAGAGGCCCTGCTCTAGTTTTAG TTCATGGTTTTGGAGCAAACAGTGACCATTGGAGGAAAAATACTCCAGTTCTCGCAAAATCTCACAGGGTATATTCAATTGATCTTATTGGTTATGGATA CTCGGATAAACCAAATCCTCGTGAATTTGGAGATAAATCCTTTTATACATTTGAGACGTGGGCTACCCAGCTAAATGACTTTTGCGTCGATGTAGTCAAA GATGAGGCTTTCTTCATATGCAATTCCATAGGAGGAGTTGTTGGTCTTCAAGCAGCAGTTATTGACTCGCAGATCTGTAAAGGCATTATGTTGTTAAATA TATCTTTGCGTTTGCTTCACATAAAAAAGCAGCCATGGTTTGGAAGGCCTTTTATCAGATCATTCCAAAGTTTGCTGAGGAATACTGCTTTGGGAAAATC TTTCTTCAAATTAGTAGCCTCATCAGAGTCTGTAAGAAGCATTCTGTGCCAGTGTTATCATGATACCTCCCAGGTGACAGAGGAACTTGTACAGAAGATC CTTCTTCCAGGACTCGAGCCAGGTGCCGCAGATGTATTTCTTGAGTTTATTTGTTACTCAGGGGGTCCCCTTCCTGAGGAGTTACTGCCTCAGGTGAAGT GTCCTGTTTTGATAGTGTGGGGTGACAAGGATCCATGGGAACCCATTGAACTCGGAAGAGGCTTTATAAATTTCGACTCTGTAGAGGATTTCGTTACCCT CCCTAATGTTGGCCACTGCCCTCAGGATGAAGCACCTCATCTTGTGAACCCACTTGTGGAGTCATTTGTAGCACGCCATTCAACACCCGCGGCAAGCGTT TCAACTGTCATCTGA
AA sequence Show only first row Show all	>Potri.003G219700.1 pacid=42784956 polypeptide=Potri.003G219700.1.p locus=Potri.003G219700 ID=Potri.003G219700.1.v4.1 annot-version=v4.1 MASTTSLTLPSTKLELPFLSPQRKNCSRSFSTTTTVSSPVFRPPPFTNKIHFHSNSSSVSHSISKIPGLQSNGFLVHSSSSDYSVNNSQIDVENSSSSND GANETQVQSSIWSWKGYSIRYQYAGNRGPALVLVHGFGANSDHWRKNTPVLAKSHRVYSIDLIGYGYSDKPNPREFGDKSFYTFETWATQLNDFCVDVVK DEAFFICNSIGGVVGLQAAVIDSQICKGIMLLNISLRLLHIKKQPWFGRPFIRSFQSLLRNTALGKSFFKLVASSESVRSILCQCYHDTSQVTEELVQKI LLPGLEPGAADVFLEFICYSGGPLPEELLPQVKCPVLIVWGDKDPWEPIELGRGFINFDSVEDFVTLPNVGHCPQDEAPHLVNPLVESFVARHSTPAASV STVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19850			alpha/beta-Hydrolases superfam...		Potri.003G219700 [exp]	0	1
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Potri.016G116400 [exp]	1.00	0.9727	Pt-PDX1.2
AT5G02540			NAD(P)-binding Rossmann-fold s...		Potri.006G083900 [exp]	2.00	0.9670
AT5G35970			P-loop containing nucleoside t...		Potri.013G073900 [exp]	2.23	0.9649
AT3G24190			Protein kinase superfamily pro...		Potri.001G050700 [exp]	2.44	0.9678
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Potri.009G151400 [exp]	2.64	0.9589	ATMGT10.1
AT4G28740			unknown protein		Potri.014G194500 [exp]	2.82	0.9698
AT3G24420			alpha/beta-Hydrolases superfam...		Potri.006G155500 [exp]	4.24	0.9563
AT4G36530			alpha/beta-Hydrolases superfam...		Potri.005G121000 [exp]	4.89	0.9636
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.006G229300 [exp]	4.89	0.9393	gdcP1,Pt-GDCP.2
AT1G16720		HCF173	high chlorophyll fluorescence ...		Potri.007G003500 [exp]	11.18	0.9381

Compare expression of checked genes

Potri.003G219700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.