Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19820 1754 / 0 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1) AT4G27640 269 / 7e-75 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G004800 [exp] 1963 / 0 AT5G19820 1776 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.013G056600 [exp] 1632 / 0 AT5G19820 1644 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.017G137400 [exp] 662 / 0 AT5G19820 682 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G082601 [exp] 556 / 0 AT5G19820 554 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.007G084901 [exp] 544 / 0 AT5G19820 509 / 1e-167 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.008G085800 [exp] 287 / 5e-81 AT4G27640 1605 / 0.0 ARM repeat superfamily protein (.1) Potri.010G169800 [exp] 278 / 7e-78 AT4G27640 1584 / 0.0 ARM repeat superfamily protein (.1) Potri.007G084501 [exp] 183 / 2e-52 AT5G19820 184 / 1e-53 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G122133 [exp] 143 / 1e-38 AT5G19820 140 / 4e-38 embryo defective 2734, ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013763 [exp] 1245 / 0 AT5G19820 1295 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10039172 [exp] 1170 / 0 AT5G19820 1229 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10034202 [exp] 270 / 5e-75 AT4G27640 1652 / 0.0 ARM repeat superfamily protein (.1) Lus10029067 [exp] 266 / 7e-74 AT4G27640 1646 / 0.0 ARM repeat superfamily protein (.1) Lus10008864 [exp] 45 / 0.0004 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 45 / 0.0005 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 44 / 0.0007 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02985 [poplar] [flax] HEAT HEAT repeat CL0020 [poplar] [flax] PF04510 [poplar] [flax] DUF577 Family of unknown function (DUF577) CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.003G220100.1 pacid=42784939 polypeptide=Potri.003G220100.1.p locus=Potri.003G220100 ID=Potri.003G220100.1.v4.1 annot-version=v4.1 ATGGACGAGTCAACTCAACTCCAGCAAGCGCAACTCGCGGCAGTCCTTGGGGGCGATCCTTCGCAATTCGAAACCCTAATCTCTTCGCTCATGTCATCAT CCAACGAAACTCGATCTCAAGCGGAGCTCATCTTCAACCTCGCCAAACAACACGATCCAAACTCGCTCTGTCTAAAACTCGCTCACCTCCTTCAGTTCTC TCCTCACCTCGACGCCCGTGCTATGTCCGCTGTCCTCCTCCGTAAACTCCTCACTCGCGATGACTCGTACCTCTGGCCGCGCCTCTCTCCGCAAACCCAG TCCTCTCTCAAATCGATCCTCCTCGCCTGTCTACAGCAAGAGTCTGTTAAATCGAACACCAAGAAGTTGTGCGACACCGTTTCTGAGCTTGCTTCCGGGA TTTTGCCCGATAATGGCTGGCCTGAGCTTTTGCCGTTTATGTTTCAGTGTGTGACGTCAGATTCCTTCAAGTTGCAGGAATCTGCGTTTTTGATCTTCGC ACAGCTGTCTCAGTATATCGGAGAGAGTTTGATTCCCTTTATCAAGGAGTTGCACGGGGTTTTTCTGCAGTGTTTGGGGTCGAGCACGAATTTCGATGTC AAAATTGCGGCCTTGAATGCTGTGATTAATTTTATTCAGTGTTTGGATAATTCGTCCGATAGAGATCGATTTCAGGATTTGTTGCCGTCGATGATAAGGA CTTTAACGGAGGCTTTAAATAATGGGAATGAGGCGACTGCTCAGGAGGCGTTGGAGTTGTTGATTGAGTTGGCGGGGACGGAGCCCAGGTTTTTGAGGAG GCAGTTGGTGGATGTCGTGGGTTCAATGTTGCAAATTGCGGAGGCGGAGAGTTTGGAGGAAGGAACTAGGCATTTGGCTATTGAGTTTGTGATTACATTG GCGGAAGCTAGGGAGAGGGCACCAGGGATGATGAGGAAGTTACCGCAGTTTATCAGTAGATTGTTCGGGATACTGATGAGGATGTTGTTGGATATTGAGG ATGATCCGGCATGGCATAGTGCGGAGAATGAGGATGAAGATGCGGGGGAAACAAGTAATTATAGCGTGGGGCAAGAGTGTTTGGATAGGTTGGCCATTTC TTTGGGTGGGAATACTATTGTTCCTGTTGCTTCGGAACAATTGCCTGCGTATTTGGCTGCTCCTGAGTGGCAGAAACATCATGCTGCTCTTATTGCATTG GCTCAGATTGCTGAAGGGTGCTCTAAGGTAATGCTAAAAAACCTGGAACAAGTAGTTACAATGGTCCTAAATTCATTTTATGACCCCCATCCCCGTGTGA GATGGGCAGCTATTAATGCAATTGGGCAGTTGTCCACGGATTTGGGTCCAGATTTGCAAAATCAATACCATCAGAGAGTTTTGCCTGCATTAGCAGCTGC CATGGATGATTTTCAGAATCCTCGTGTTCAGGCACATGCTGCTTCGGCTGTGCTTAACTTCAGTGAGAATTGTACTCCAGAAATTTTAACACCGTACCTA GATGGAGTAGTGAGCAAATTGCTTGTTCTTCTACAGAATGGAAAACAAATGGTGCAAGAGGGAGCGTTGACTGCTTTGGCATCAGTTGCTGATTCCTCTC AGGAGCACTTCCAAAAATACTATGATGCAGTCATGCCTTACTTGAAGACTATCTTGGTGAATGCAAATGACAAAGCTAACCGCATGCTTCGTGCCAAATC CATGGAGTGCATCAGTCTAGTTGGGATGGCAGTGGGGAAAGAGAAGTTTAGGGATGATGCCAAGCAGGTTATGGATGTACTTCTGTCATTGCAAGTATCT CAGATGGAGTCAGATGATCCAACAACAAGTTACATGCTACAAGCATGGGCCAGACTTTGCAAGTGTTTAGGACAAGATTTTCTTCCTTACATGAGTGTTG TCATGCCACCTTTGCTTCAGTCTGCTCAACTCAAGCCTGATGTAACCATTACATCTGCGGATTCAGATAATGACATTGATGATTCTGATGATGAAAGCAT GGAGACTATCACCCTTGGTGACAAAAGAATTGGGATCAAGACTAGTGTTCTGGAGGAAAAAGCTACTGCTTGTAACATGTTATGTTGCTACGCTGATGAG CTGAAGGAAGGATTCTTTCCATGGATTGATCAGGTTGCCCCAACCTTGGTACCTCTTCTTAAATTTTATTTTCATGAAGAGGTTAGGAAAGCAGCTGTTT CAGCCATGCCAGAACTTCTGCGTTCTGCAAAATTAGCTATCGAGAAAGGGCTTGCTCAGGGTCGCAATGAGTCTTATGTAAAGCAGCTGTCTGACTATAT TATTCCAGCCCTGGTTGAAGCACTGCACAAGGAACCCGATACTGAGATCTGTGCAAGCATGTTGGATGCCTTAAATGAATGCTTGCAGATATCTGGAGTG CTTGTTGATGAAGGTCAAGTGCGATCTGTTGTGGATGAGATAAAACTGGTCATCACTGCCAGCTCAAGTCGCAAGAGAGAGAGAGCAGAGAGAGCCAAAG CTGAAGACTTTGATGCAGAGGAGGGAGAGTTGATCAAGGAGGAAAATGAGCAAGAGGAGGAAGTTTTCGACCAAGTTGGTGAAATCTTGGGAACTCTGAT TAAAACATTCAAAGCTTCTTTCTTGCCTTTCTTTGATGAGCTATCATCCTATCTTACTCCCATGTGGGGCAAGGATAAGACTGCTGAAGAGAGAAGGATT GCAATTTGCATTTTTGATGATGTTGCGGAGCAATGTCGCGAGGCGGCTCTTAAATATTATGATACATATCTTCCTTTCTTACTGGAGGCTTGCAATGATG ACAACCCGGATGTTCGGCAGGCAGCCGTATACGGGCTTGGTGTTTGTGCAGAAGTTGGTGGTTCTGTGTTTAAACATCTAGTTGGAGAGGCTTTATCAAG ACTTAATGTTGTAATACGGCATCCTAATGCTAAGCAACCAGACAATGTCATGGCATATGATAATGCTGTTTCAGCTTTAGGGAAAATTTGCCAGTTTCAT CGTGACAGTATAGATTCAGCTCAGGTTGTTCCTGCATGGTTAAACTGTCTGCCAATAACAGGAGACTTGATTGAAGCAAAAGCTGTTCATGAACAACTTT GTTCAATGGTGGAGAGGTCAGATAGAGAACTTTTGGGACCCAACAATCAGTATCTTCCTAAGATTGTTTCAGTATTTGCTGAGGTTCTATGTGGTAAGGA TCTAGCAACCGAACAAACTCTAAGCCGAATGGTTAATCTTCTGAGACAACTACAACAAACCTTACCACCAGCTACCTGGGCCTCGACCTTGTCGGTGTTG CATCCACAACAACAGATGGCATTGCAATCCATCCTCTCATCATAA
AA sequence Show only first row Show all	>Potri.003G220100.1 pacid=42784939 polypeptide=Potri.003G220100.1.p locus=Potri.003G220100 ID=Potri.003G220100.1.v4.1 annot-version=v4.1 MDESTQLQQAQLAAVLGGDPSQFETLISSLMSSSNETRSQAELIFNLAKQHDPNSLCLKLAHLLQFSPHLDARAMSAVLLRKLLTRDDSYLWPRLSPQTQ SSLKSILLACLQQESVKSNTKKLCDTVSELASGILPDNGWPELLPFMFQCVTSDSFKLQESAFLIFAQLSQYIGESLIPFIKELHGVFLQCLGSSTNFDV KIAALNAVINFIQCLDNSSDRDRFQDLLPSMIRTLTEALNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL AEARERAPGMMRKLPQFISRLFGILMRMLLDIEDDPAWHSAENEDEDAGETSNYSVGQECLDRLAISLGGNTIVPVASEQLPAYLAAPEWQKHHAALIAL AQIAEGCSKVMLKNLEQVVTMVLNSFYDPHPRVRWAAINAIGQLSTDLGPDLQNQYHQRVLPALAAAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL DGVVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPYLKTILVNANDKANRMLRAKSMECISLVGMAVGKEKFRDDAKQVMDVLLSLQVS QMESDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNDIDDSDDESMETITLGDKRIGIKTSVLEEKATACNMLCCYADE LKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAQGRNESYVKQLSDYIIPALVEALHKEPDTEICASMLDALNECLQISGV LVDEGQVRSVVDEIKLVITASSSRKRERAERAKAEDFDAEEGELIKEENEQEEEVFDQVGEILGTLIKTFKASFLPFFDELSSYLTPMWGKDKTAEERRI AICIFDDVAEQCREAALKYYDTYLPFLLEACNDDNPDVRQAAVYGLGVCAEVGGSVFKHLVGEALSRLNVVIRHPNAKQPDNVMAYDNAVSALGKICQFH RDSIDSAQVVPAWLNCLPITGDLIEAKAVHEQLCSMVERSDRELLGPNNQYLPKIVSVFAEVLCGKDLATEQTLSRMVNLLRQLQQTLPPATWASTLSVL HPQQQMALQSILSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.003G220100 [exp]	0	1
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Potri.003G073000 [exp]	3.31	0.8561
AT5G07900			Mitochondrial transcription te...		Potri.003G190400 [exp]	5.29	0.8203
AT4G07410		PCN	POPCORN, Transducin family pro...		Potri.002G117500 [exp]	6.16	0.7715
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	6.63	0.8427
AT4G07410		PCN	POPCORN, Transducin family pro...		Potri.014G014900 [exp]	10.00	0.8001
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Potri.009G120900 [exp]	15.00	0.7902
AT1G06720			P-loop containing nucleoside t...		Potri.017G017700 [exp]	15.49	0.7867
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Potri.004G228700 [exp]	16.34	0.8355
AT1G42440			unknown protein		Potri.005G250100 [exp]	16.52	0.7815
AT5G41190			unknown protein		Potri.003G124700 [exp]	20.39	0.7918

Compare expression of checked genes

Potri.003G220100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.