Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55325 2185 / 0 MAB2, GCT MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G004200 [exp] 3247 / 0 AT1G55325 2185 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035973 [exp] 2073 / 0 AT1G55325 1843 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10016683 [exp] 1368 / 0 AT1G55325 1302 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10016684 [exp] 891 / 0 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10035972 [exp] 333 / 4e-104 AT1G55325 313 / 5e-98 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06333 [poplar] [flax] Med13_C Mediator complex subunit 13 C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G220800.4 pacid=42784656 polypeptide=Potri.003G220800.4.p locus=Potri.003G220800 ID=Potri.003G220800.4.v4.1 annot-version=v4.1 ATGTGGACCAATGTATTCAAAATTGGTGGTCTGCATCATGTATCATGGTTCCAGTTTCTCCCGAATGAATCTGATTTGAACTCTTTACCTGATAAGAGTG TAAAAGTAGAGCAGAAAGACTTTGCTACATGGCTTGTGCTTTCAGCTCATTTTCAGTTGCAGAAGGAGGGGTTTCTAAGCACATGGACCAATTCCTTTGT TGGACCTTGGGATCCATCACAAGGTCTACATAATCCTGATGAGAAAATAAAGCTCTGGCTTTTCCTTCCTGGACGTTACTCATCTGTTGTTGATAAGGCA CAGGCTGCAGTGTCTAGATTAAGAGTTGTTGCATCTGGAGTTTGGGTGGCTCCTGGGGACTCTGAAGAGGTTGCAGCAGCCCTTTCTCAGTCTTTGAGGA ATTATATAGAGAGAGCATTGACCGGGCATTCATACATGAGGTTTGGAGATGTATTTTTAAAGTACCATCCATCTCAAAGTGAAGGACTTTCCAGGAAAGG ACGGCCCACAGTTGAATTCATCTTTTCTGCCTCTGAGGAGGCGATCTTTGTGCACGCGATAATATCTGCAAAGCATATCCGTGCACTTTCAAATGGTGAC GTGGAAAGAGTTTTAAAACAGTCTTCTTCTAATTCCAGTTATAGGCTTCCAGTGATCGCTTCTCCCCATGGAATTCGTGGTTCACTGACAGGATGTTGTC CAAATGATCTTGTCAAGCAAGTGTTCATGAGTTCTGGCAAGTCTAAGACATCGAATGGATTTATTGGCATGCCATATCATGTTTCTCAAGGGCCTGGCTG CCAGCTGAGGGAGCAAAATTGCTATGTTGAAATTACACTAGGTTGCCCAAGGTCAGAGAGTGACAAGGAATTGGAAACAAACTTGCAGTCAACTAAGAAT TCATCCAAGAATCATATTGCAGAATCTCCTGCAGTAAGGAGAGGTGATCAGAAGGTATCACCAGATCACTTATCAGCTTATGAGAAAGCATTTATTTATC CAGTTGAAGCAATTGTTGTCCCAGTCTTGCCAAAATCTTTTGCCAGGTCTTCTTTGAAAAGATTTTGGCTACAAAATTGGATAGGGCCATCACTGCCTGG TTCATCATTCTTTATGCACTGTGGTGGTGATACAGATTTTCTGGAAGGATCTTGGATTGAATCTAATGGATTACGTATGCAGCACAGCTATAACAGTAGT AGCAATAGTAATAGTAGCAGCATCAGCTCCATAATTAGCGGCTCTAGTGATAGTGATTACAAGATGACCACCGGTGAGCTTGAGGCTGATGGTGATTCCT TGTCATGCAGACAATCCGGTTTATCTTCCAATGATCAGATGGAAATTGATGACCTCAAATTGGGTTCTAAGCGTCCTCGAACAGGAATGAATGAGCCATA TGGTCAAGTGGGCACGGTTAAAAATGCTCCTATGCAAGAGTTTGGTTCGGTTGAAGTTAATGCTTCAGCTATTACAGGAATTGCAAATGAGCAGATTGGA TCTCGTTGGGATTGGGATGATGACAGGGGTGCAGGAATGGATATCCAAGCTCTTCTCTCTGAATTTGGTGATTTTGGCGACTTCTTTGAGAATGATGATC TGCCTTTTGGAGAGCCTCCTGGAACAGCAGAGTCACAGGCTCTTATGTTTTCTGGTCCAGATTGTGGTGAAGTTGCTAACACTCCTATAGGAGTAATGGA TGTTGTGGATCAGATGCTTCTGCCAGCAGCTTTCCCATCTTTCGAAAGTTTTAATCCATCTCCTGCAGTAGCCATAGATGAAAGTGCCAGCAAAAGCCAA GAAGCCACTCACGGTGCTCTGGCATTAGTTCCAGTGAACTGCACTCCACCATCTTCTTCAGGTGAGTTTGATTATTTAATCAAAGCCGAAGCTTTGTTGA CATTTGCCCCAGAATATGGTGCAGTTGAAACCCCTACAAGCGAATTCTCCTCATCAATTTTCAGACGCCCATATTGTCCAAAATCTCACCAAGTGGAGAG CTCAAATCCAAGTTCAAATAAGTATGCATATGGTGCAACACCACCACCTTCTCCTTTCTTTGAAGGATCAAATGAGAAAACTGGTATGCAGGTGAATCTG AAAACAGGTGCTGGAAGGAATGACACAAAAAAATATTACACTCTTGTGGAAAGTGGGAAAGTGCATCTTGATAGAAGAACTTTCATATTTAATGAAAGTC ATCCTACAAGTGAGGTGATGGTGCCATCTCCATTATTGACTTCCAATTCCTCAAATACTGTCCAGAGGAAAATGAGCGATTGCATACTAGGAGCTGAAAA TTTCTTATTTTCTATGAAGACTGTTCTGGCAACTGAAGTAGAATGCATTATGTTTCAAGCTTCCATGTGCAGTATGCGACACATGCTGTTGTCTTATGGT AACCCTACACCTGTAAATTTGAGTAGGTTAAGTGGAAGCACTGTTTTGAATCAGCTGCACGGTGATGCAAGTACCATGACGGACAGCATATCTGCCAGGT ATGAAGTGAAGAAAAAAGAATCTATACCAGTTAGAATAGCTGGGGATATGGATGGGGGATTGCTAGATGGACACCTCAATGCACCTGTAGGTGTTTGGCG CTCTGTTGGAGTTCCTAAATTAACAAAACATACTAGTTCACCAAATATTGAAGTTAGCGCATCCTTGCCACACCATTCATTCAGCGAGGAAGGAATTCTC TCTTATAGGCAAAGGCAGCAGCCGCTGCAGGAGCTTTTGGATGGCATGGCATTGCTTGTCCAACAAGCTACTTCCTTCGTTGATGTGGCTCTGGATGCAG ATTGTGGTGATGGTCCTTATGGTTGGCTTGCATTACAAGAACATTGGAGGCGTGGATTTTCTTGTGGGCCTTCCATGGTCCATGCAGGTTGTGGGGGGGC TTTGGCTGCTTGTCATTCTCTGGACATTGCTGGCGTAGAACTAGTTGATCCACTTTCTGCTGATATTCATTCTTCTGCAGTGATTAGCTTGCTGCAGTCT GAAATTAAAACAGCCTTAAAATCTGCATTTGGGAATTTGGACGGTCCATTATGTGTCACTGATTGGTGCAAAGGCCGCTTTCAGTCAGGTGATGGAGCAA CCACATGTGATGGACTCATTGGGGAGTCCACTTTAAGTGGATGCAAAGATTCTTCAAGCATTGTAACACTGCCTGTTGGAGAACCAATGAGCCCAGCCCT CTCTTGTGCTGCTGGATCATCGTCCCTCAAAGCATCCAGTACATTGGATGGAGCTAAAGTGGATGAGACATCCCAAAGGAGATCAAACCAGGAAATAGAG CCAGAGCTGCGTTTCAGGATAAAGCCGACAGTGTTTGTTCTTCCCTCACCTGCTATTCTTGTTGGGTACCAGGACGATTGGCTTAAGACATCGGCAAGCT CTTTACAACTCTGGGAAAAGGCTCCTTTTGAACCATATGCTTCACCAAAACCAATTAGTTATTATGTTGTATGTCCAGACATCGATCCCCTTACTTCTGC TGCTGCAGATTTTTTCCAACAACTTGGAACTGTTTATGAAACTTGCAAACTGGGAACTCATTCACCTCAGAGTTTGGGAAACCATATGGAGATGGATGCT GGGAAATCTTTGTATACTGGTTTCGTACTACTTGATTGCCCTCAATCAATGAAGATAGAAAGCAGTAATGCATCTCTTGTGGGATCGATAAGTGATTATT TTCTCTCTCTCTCCAATGGTTGGGACTTGGCGAGCTATCTTAAGTCTCTCTCAAAAGCTGTCAAGGCTTTGAAAATTGGTCCATCATTATTGACAAACCC AAAAGAAGGAAGTAGCAGTTCTTGTATGGTTATCTATGTGGTGTGCCCCTTTCCTGAACCTGCTGCAGTTCTACAAACTGTCATTGAATCCTCTGTTGCT ATTGGATCAATCATTCCCCCAGCTGATAGAGAGAGGAGGTCTATGTTGCTGGGTCAGGTCAGGAAAGCATTAAACAGCTTGGCAGCTGTGGATGATGCAT CAGCATCAAATGTTCTAGTACTTTCAGGGTTTAGCACTCCTAAATTGGTATTGCAAATCGTGACAGTTGATGCCATTTTTAGGGTTACAAGTCCAGCTCT TAATGAGCTCATCATTCTTAAGGAGACTGCTTTCACTGTCTATAATAAGGCTCGGCGAATTTCAAAAGGATCTTCAAATGATGTTCAGTCATCATCAGCG TCAAGTAGATCTCATTCGGCATTAACACAAATGAGTTCTGTTCCAGCAATGTGGAATTCTTTACCACGAGAGGCTGACATTGATTCTAGATTGAGAGCCG GTACCTGGGATAATTCCTGGCAAACAATGAGGACTGGAAGCTTGACCTGTGATCCAAACAGAAATGGAGATTTTTCTCTTCAAGATGAGATTCACTACAT GTTTGAACCACTTTTTATTCTTTCAGAGCCTGGATCTCTGGAGCATGCTGTCACGCCTGCAGTTTTTGGTAATTTAGGCTCTGAATCTTTAAAGATGCAA TCTGATGATAGCAGTGGAAGCTTCATGCAAAGTGCAAGCTCAGCAGGGAGTGTGGATACTGGATCTAGCTCTCAACATGATGGATCTGAGCCCACTGGCT TTGGATCTAGTCATCAAAAAGCACTTCCAAGCCTGCATTGCTGCTATGGATGGACAGAGGACTGGCGTTGGCTAGTTTGCATCTGGACAGACGCAAGAGG AGAATTGCTTGACAGCCATATATTCCCTTTTGGTGGAATTAGCAGTCGCCAGGATACAAAAGGTCTGCAATGCCTTTTTGTGCAAGTTTTGCAGCAAGGA TGTCAGATACTTCAGTCTTGCTCCTCTCCTGATACCGGCAGTGTAAAGCCTAGAGATTTTGTGATTACTCGCATTGGAAGCTTCTTTGAGCTTGAGTACA TAGAGTGGCAGAGAGCCATTTATTCAGTTGGGGGTTCTGAGGTGAAGAAATGGCCACTGCAACTACGGCGCTCAATGCCTGATGGGATGGCTGCAAGCAC TAATGGTGCTTCCTTGCAGCAGCAGGAGATGAGTTTAATTCAAGAAAGAACCCTGCCTTCCTCACCTAGTCTATTGTATAGCCCTCTCTTGAAAGCATCT GGCTATATGAAGGGTGGTTTGGGGCAACCTTCTTCGAGAAAACAGCTTATGGGTGGGTACACTGTTGTTGACAACTCAAGGGGGATGCTTCAGTGGGTGC AGAGCATCACTCTTGTTACAATTTCAGTCGACCATTCTTTACATCTAATGTTTCAGGCTGATATGCCATCTCCTGTTTGTGTAGGAGGAAATGGCAGTAG TGTTGGCCCATCAATCTATCGGGAAGGTATCTCTCCTGTCAAGTCTCTTGGTTCAACATCCGCATCTTACATTTTGATTCCGTCACCCAGCATGCGCTTC CTTCCCCCAACACCTTTGCAGCACCCCACATGCCTCACTGCTGAATCCCCACCACTTGCTCATCTCCTTCATAGTAAGGGATCTGCAATTCCTCTCTCCA CTGGTTTCGTGGTTTCAAAAGCTGTACCTTCCATGAGGAACGACTATAGGAGCGATGCAAGAGAAGAATGGCCTTCAGTTCTTTCTGTGAGTCTCATTGA TTATTATGGAGGTAACAACATGACCGAAGATAAAATGTATAGAGGGATTATGAAGCAAGGGGGACGGACTTTAGGCACAGATGGTAAAGATTTAGAAATC GGGACCCAATTAATTCTTGAAAACATCGCAGCAGAACTTCAAGCCCTATCTTGGATGACCGTGAGCCCAGCATACTTGGAGCGACGAACTGCTCTCCCAT TTCATTGTGACATGGTTTTAAGACTCAGAAGACTGCTTCATTTTGCTGATAAAGAGCTCTCTTCACAGCCTGGTCGGTCACAGGTATAA
AA sequence Show only first row Show all	>Potri.003G220800.4 pacid=42784656 polypeptide=Potri.003G220800.4.p locus=Potri.003G220800 ID=Potri.003G220800.4.v4.1 annot-version=v4.1 MWTNVFKIGGLHHVSWFQFLPNESDLNSLPDKSVKVEQKDFATWLVLSAHFQLQKEGFLSTWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGRYSSVVDKA QAAVSRLRVVASGVWVAPGDSEEVAAALSQSLRNYIERALTGHSYMRFGDVFLKYHPSQSEGLSRKGRPTVEFIFSASEEAIFVHAIISAKHIRALSNGD VERVLKQSSSNSSYRLPVIASPHGIRGSLTGCCPNDLVKQVFMSSGKSKTSNGFIGMPYHVSQGPGCQLREQNCYVEITLGCPRSESDKELETNLQSTKN SSKNHIAESPAVRRGDQKVSPDHLSAYEKAFIYPVEAIVVPVLPKSFARSSLKRFWLQNWIGPSLPGSSFFMHCGGDTDFLEGSWIESNGLRMQHSYNSS SNSNSSSISSIISGSSDSDYKMTTGELEADGDSLSCRQSGLSSNDQMEIDDLKLGSKRPRTGMNEPYGQVGTVKNAPMQEFGSVEVNASAITGIANEQIG SRWDWDDDRGAGMDIQALLSEFGDFGDFFENDDLPFGEPPGTAESQALMFSGPDCGEVANTPIGVMDVVDQMLLPAAFPSFESFNPSPAVAIDESASKSQ EATHGALALVPVNCTPPSSSGEFDYLIKAEALLTFAPEYGAVETPTSEFSSSIFRRPYCPKSHQVESSNPSSNKYAYGATPPPSPFFEGSNEKTGMQVNL KTGAGRNDTKKYYTLVESGKVHLDRRTFIFNESHPTSEVMVPSPLLTSNSSNTVQRKMSDCILGAENFLFSMKTVLATEVECIMFQASMCSMRHMLLSYG NPTPVNLSRLSGSTVLNQLHGDASTMTDSISARYEVKKKESIPVRIAGDMDGGLLDGHLNAPVGVWRSVGVPKLTKHTSSPNIEVSASLPHHSFSEEGIL SYRQRQQPLQELLDGMALLVQQATSFVDVALDADCGDGPYGWLALQEHWRRGFSCGPSMVHAGCGGALAACHSLDIAGVELVDPLSADIHSSAVISLLQS EIKTALKSAFGNLDGPLCVTDWCKGRFQSGDGATTCDGLIGESTLSGCKDSSSIVTLPVGEPMSPALSCAAGSSSLKASSTLDGAKVDETSQRRSNQEIE PELRFRIKPTVFVLPSPAILVGYQDDWLKTSASSLQLWEKAPFEPYASPKPISYYVVCPDIDPLTSAAADFFQQLGTVYETCKLGTHSPQSLGNHMEMDA GKSLYTGFVLLDCPQSMKIESSNASLVGSISDYFLSLSNGWDLASYLKSLSKAVKALKIGPSLLTNPKEGSSSSCMVIYVVCPFPEPAAVLQTVIESSVA IGSIIPPADRERRSMLLGQVRKALNSLAAVDDASASNVLVLSGFSTPKLVLQIVTVDAIFRVTSPALNELIILKETAFTVYNKARRISKGSSNDVQSSSA SSRSHSALTQMSSVPAMWNSLPREADIDSRLRAGTWDNSWQTMRTGSLTCDPNRNGDFSLQDEIHYMFEPLFILSEPGSLEHAVTPAVFGNLGSESLKMQ SDDSSGSFMQSASSAGSVDTGSSSQHDGSEPTGFGSSHQKALPSLHCCYGWTEDWRWLVCIWTDARGELLDSHIFPFGGISSRQDTKGLQCLFVQVLQQG CQILQSCSSPDTGSVKPRDFVITRIGSFFELEYIEWQRAIYSVGGSEVKKWPLQLRRSMPDGMAASTNGASLQQQEMSLIQERTLPSSPSLLYSPLLKAS GYMKGGLGQPSSRKQLMGGYTVVDNSRGMLQWVQSITLVTISVDHSLHLMFQADMPSPVCVGGNGSSVGPSIYREGISPVKSLGSTSASYILIPSPSMRF LPPTPLQHPTCLTAESPPLAHLLHSKGSAIPLSTGFVVSKAVPSMRNDYRSDAREEWPSVLSVSLIDYYGGNNMTEDKMYRGIMKQGGRTLGTDGKDLEI GTQLILENIAAELQALSWMTVSPAYLERRTALPFHCDMVLRLRRLLHFADKELSSQPGRSQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	0	1
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.016G097300 [exp]	1.41	0.9141
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	1.73	0.9088	Pt-ABA3.1
AT3G18310			unknown protein		Potri.012G041300 [exp]	3.00	0.8735
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.002G024100 [exp]	3.74	0.8782	XRN2.1
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.005G129800 [exp]	4.00	0.9037
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Potri.002G181400 [exp]	5.74	0.8647	SIN1.1,DCL902
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Potri.013G068400 [exp]	6.00	0.8811
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Potri.015G050800 [exp]	6.24	0.8610
AT3G12590			unknown protein		Potri.008G052700 [exp]	6.32	0.8679
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	7.14	0.8560

Compare expression of checked genes

Potri.003G220800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.