Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13490 897 / 0 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) AT3G11710 330 / 3e-105 ATKRS-1 lysyl-tRNA synthetase 1 (.1) AT4G26870 89 / 2e-18 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G33760 81 / 7e-16 tRNA synthetase class II (D, K and N) family protein (.1) AT4G31180 62 / 9e-10 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT3G30805 54 / 3e-08 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G17300 42 / 0.001 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090400 [exp] 323 / 9e-103 AT3G11710 946 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.018G090600 [exp] 322 / 2e-102 AT3G11710 937 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.006G166000 [exp] 319 / 3e-101 AT3G11710 936 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.009G084300 [exp] 84 / 9e-17 AT4G33760 1004 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.001G289001 [exp] 81 / 1e-15 AT4G33760 998 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.006G085400 [exp] 66 / 6e-11 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013408 [exp] 926 / 0 AT3G13490 881 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10010317 [exp] 871 / 0 AT3G13490 827 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10001440 [exp] 332 / 6e-106 AT3G11710 912 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10001625 [exp] 330 / 4e-105 AT3G11710 900 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10037243 [exp] 80 / 3e-15 AT4G33760 1033 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Lus10018862 [exp] 69 / 4e-12 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028555 [exp] 59 / 6e-09 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10035657 [exp] 53 / 4e-07 AT4G33760 688 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00152 [poplar] [flax] tRNA-synt_2 tRNA synthetases class II (D, K and N) CL0021 [poplar] [flax] OB PF01336 [poplar] [flax] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G221600.1 pacid=42786324 polypeptide=Potri.003G221600.1.p locus=Potri.003G221600 ID=Potri.003G221600.1.v4.1 annot-version=v4.1 ATGGAGGCACTGAAAATATGGAGTCTGTCTTCAAAGCCATTCAATCTCAGACATCTCCTTCACTTTGCTTCTTCCAGCGCTTCTGTCACCACCACCAAAC ACTCTTATTCCACTCATGTCCTTCGCTGCTGCTCCACCACTTCCACCACCACCACCAGAACTGCCGGCCGCAACCGCCGCCAGTCCTCCTCCTCCTCCAC TTCTGACCGTGATGCCATTCGTGCCCTTCGCTTGAAAAAGGTTGAAGAATTGAGGAGCAAAGGACTTGAGCCCTATGCATATAACTGGGATAGGACTCAT ACTGCCAATCACCTACAAGAGATATACAAATATTTAGCGAATGGTGAAGAGTCGAATGGTGAGAGTGATCAAGTATCTATTGCTGGGAGAATTGTTGCGC GTAGAGCTTTTGGAAAGCTTGCATTTCTTACTCTTAGAGATGACTCTGGGACAATTCAGCTTTACTGCGAGAAGGATAGGCTTTTGAATGATCAGTTTGA GCAGTTGAAAGCACATGTTGATGTTGGTGATATATTGGGTGTGAATGGCTCAATGAAGCGCACAGAGAAAGGTGAGCTCTCTGTTTGCGTGAGTTCTTTC TCGATTCTTACGAAATCTCTGCTTCCACTGCCAGACAAATATCATGGTCTAACTGATGTAGATAAGCGCTACCGTCAAAGGTATGTTGATATGATCTCAA ATCCTGAAGTTGCTGATGTGTTCCGTAAAAGAGCAAAGATTGTTTCAGAGATTCGCAAGACTGTGGAATTGTTAGGTTTTGTTGAAGTTGAGACTCCAGT TCTCCAGGGAGCAGCTGGTGGAGCCGAAGCTAGGCCATTTGTGACATATCACAATTCACTTGGAAGGGATCTCTACCTTAGAATTGCAACTGAGCTTCAC TTAAAGAGAATGCTGGTTGGGGGATTTGAAAAGGTATATGAGATTGGCAGAATTTTCAGAAATGAGGGTCTTTCACCGCGTCATAATCCTGAATTTACAA CCATAGAGATGTATGAAGCATATTCGGATTACCAGAGCATGATGATCATGGCAGAGGAAATTGTCACTCGATGTGCTCTTGCTGTTCACGGCAAGCTTAC CCTAGAATTCCAGGGTGTAGAGATTTGTTTAGAGCGGCCCTGGAGAAGGGAAACCATGCACAATCTTGTAAAAGAAGCCACTGCTATTGATTTCAATGAT TTGGGTGATGATCTTGAAGTTGCTAAAGATGTCACCTTGAGGACTCTTGGATCTGGACTTGAAGGTAAAGACAAATCTGCCATTGCAGCATGTCCTTCTG TTGGGCACCTCGTTAATGAGCTTTTTGAAATCATTGTAGAGCCAAAGCTCATGCAACCCACATTTGTTTTGGACTATCCTATTGAGATATCTCCTCTAGC CAAGCCACACCGAAGGCATGTAGGCTTGACCGAGAGATTTGAACTATTCATCTGTGGTCGTGAAATGGCGAATGCATTTTCCGAATTGACTGATCCCATG GATCAGAGAGGACGCTTGGAAGAGCAAGTGAGACAGCATAATGAGAAGAGAGCTTCAGTTGCTTCAGAAGCAGATGGTGCAGATGGCAAAAGCAAGAAAG ACGATGATGAATCGTATGAAGTAACCCTTGATGAGGACTTTTTAACAGCTTTAGAATATGGAATGCCTCCAGCTTCAGGAATGGGACTCGGAATAGACAG ACTGGTGATGCTGTTGACAAACTCTGCAAGTATCCGAGATGTTATTGCTTTTCCCGTCCTCAAGATTCAGCAGTAG
AA sequence Show only first row Show all	>Potri.003G221600.1 pacid=42786324 polypeptide=Potri.003G221600.1.p locus=Potri.003G221600 ID=Potri.003G221600.1.v4.1 annot-version=v4.1 MEALKIWSLSSKPFNLRHLLHFASSSASVTTTKHSYSTHVLRCCSTTSTTTTRTAGRNRRQSSSSSTSDRDAIRALRLKKVEELRSKGLEPYAYNWDRTH TANHLQEIYKYLANGEESNGESDQVSIAGRIVARRAFGKLAFLTLRDDSGTIQLYCEKDRLLNDQFEQLKAHVDVGDILGVNGSMKRTEKGELSVCVSSF SILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISNPEVADVFRKRAKIVSEIRKTVELLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELH LKRMLVGGFEKVYEIGRIFRNEGLSPRHNPEFTTIEMYEAYSDYQSMMIMAEEIVTRCALAVHGKLTLEFQGVEICLERPWRRETMHNLVKEATAIDFND LGDDLEVAKDVTLRTLGSGLEGKDKSAIAACPSVGHLVNELFEIIVEPKLMQPTFVLDYPIEISPLAKPHRRHVGLTERFELFICGREMANAFSELTDPM DQRGRLEEQVRQHNEKRASVASEADGADGKSKKDDDESYEVTLDEDFLTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPVLKIQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Potri.003G221600 [exp]	0	1
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.015G074100 [exp]	6.24	0.9326	Pt-ALDH1.3
AT4G21770			Pseudouridine synthase family ...		Potri.004G019100 [exp]	9.59	0.9109
AT1G36320			unknown protein		Potri.005G170400 [exp]	10.00	0.9260
AT2G36990		SIG6, SIGF, ATS...	SIGMA FACTOR 6, RNApolymerase ...		Potri.006G125700 [exp]	13.85	0.9309	SIGF.1
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Potri.007G098700 [exp]	15.49	0.9196
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Potri.018G024300 [exp]	15.96	0.9280
AT1G80770		PDE318	pigment defective 318, P-loop ...		Potri.002G134900 [exp]	24.24	0.9003
AT1G67840		CSK	chloroplast sensor kinase (.1....		Potri.010G047500 [exp]	26.24	0.9192
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Potri.007G046400 [exp]	28.28	0.9250
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099200 [exp]	29.15	0.9210

Compare expression of checked genes

Potri.003G221600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.