Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55480 405 / 4e-142 ZKT protein containing PDZ domain, a K-box domain, and a TPR region (.1) AT1G02910 59 / 3e-09 LPA1 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) AT5G17170 47 / 7e-06 ENH1 enhancer of sos3-1, rubredoxin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G002700 [exp] 391 / 6e-136 AT1G55480 303 / 1e-101 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Potri.002G206300 [exp] 57 / 7e-09 AT1G02910 615 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.019G042600 [exp] 45 / 4e-05 AT5G17170 301 / 3e-103 enhancer of sos3-1, rubredoxin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010322 [exp] 400 / 4e-140 AT1G55480 401 / 1e-140 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Lus10013403 [exp] 397 / 1e-138 AT1G55480 395 / 3e-138 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Lus10010280 [exp] 55 / 3e-08 AT1G02910 610 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10036345 [exp] 55 / 4e-08 AT1G02910 620 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10003157 [exp] 47 / 1e-05 AT5G17170 377 / 3e-133 enhancer of sos3-1, rubredoxin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G222200.2 pacid=42786729 polypeptide=Potri.003G222200.2.p locus=Potri.003G222200 ID=Potri.003G222200.2.v4.1 annot-version=v4.1 ATGTCTTTAGCTCCAAGTAGATATCCTGCTCTCTACTCTTCATCACCATTACCAACAAGTAGTGTCCAAGCCAAGCAAATCCCACTCCTTTTCTCTCAAA ACACTCACTTTTTATCCAAGAACTACTCATTTCTCAGCACTTCAACAGCTTTCAGCAATACCCTTTTGCTAAAACCATCAAATTCAATCCTTAAAGCTTC AGAAACTGAGTCACAGACATCAAAATCTGCTGAGAGTGGAAGTGGAGGTGAAGGTGAAGGTGAAGGTGAAGGAGAAGAAAAGTATGAAGAATATGAGGTC GAAATAGAGCAGCCTTATGGGATAAAGTTTGCAAAGGGCAGAGATGGCTCTACTTATATTGATGCTATTGCTCCTGGTGGATCAGCTGATAAGAATGGCA AATTCAGTGTTGGTGATAAAGTTATTGCAACCAGTGCTGTGTTTGGGACAGAGATTTGGCCAGCAGCTGAATATGGGAGGACAATGTACACCATCCGCCA AAGAATTGGCCCATTATTCATGAAGATGCAAAAGAGATATGGGAACATGGATTATACCGGTGAACTGACAGAAAAGGAAATTATCAGAGCTGAGAGGAAC TCTGGTGTCATTAGTAACAGAGTGAGAGAAATCCAAATGCAAAATTACTTAAGAAAAAAGGAGCAGAAAGAACAAAGAGAAAAGGATCTTCGCGAAGGGC TGCAATTATACAAAAATGCCAAATATGAGGAAGCACTGGAGAAGTTCGAGTCTATGCTGGGATCGAAACCAGACCCAACTGAAGCTGCAGTGGCAAGTTA CAATGTCGCTTGTTGTTATTCTAAGCTTAATCAGTTACAAGCTGGGCTATCTGCACTTGAAGATGCGATGAAAGCAGGATTTGAAGACTTTAAGCGAATC CGGACAGATCCTGACCTATCCAATTTAAGGACAGCTGAGGGATTTGAACCTCTTATGAAAAGGTTTGATGAATCATTTATCAACGAGAATGCCATCAACG CCATTAAATCTCTATTCGGATTCAACAAGAAATAG
AA sequence Show only first row Show all	>Potri.003G222200.2 pacid=42786729 polypeptide=Potri.003G222200.2.p locus=Potri.003G222200 ID=Potri.003G222200.2.v4.1 annot-version=v4.1 MSLAPSRYPALYSSSPLPTSSVQAKQIPLLFSQNTHFLSKNYSFLSTSTAFSNTLLLKPSNSILKASETESQTSKSAESGSGGEGEGEGEGEEKYEEYEV EIEQPYGIKFAKGRDGSTYIDAIAPGGSADKNGKFSVGDKVIATSAVFGTEIWPAAEYGRTMYTIRQRIGPLFMKMQKRYGNMDYTGELTEKEIIRAERN SGVISNRVREIQMQNYLRKKEQKEQREKDLREGLQLYKNAKYEEALEKFESMLGSKPDPTEAAVASYNVACCYSKLNQLQAGLSALEDAMKAGFEDFKRI RTDPDLSNLRTAEGFEPLMKRFDESFINENAINAIKSLFGFNKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.003G222200 [exp]	0	1
AT3G01060			unknown protein		Potri.017G090100 [exp]	2.00	0.9821
AT4G28740			unknown protein		Potri.014G194500 [exp]	2.44	0.9789
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.019G118500 [exp]	2.44	0.9836	PETC.1
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.008G187400 [exp]	3.87	0.9795	Pt-AOAT1.2
AT4G31530			NAD(P)-binding Rossmann-fold s...		Potri.001G253900 [exp]	4.47	0.9803
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Potri.008G063800 [exp]	4.58	0.9816
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Potri.006G150700 [exp]	5.74	0.9707
AT2G05620		PGR5	proton gradient regulation 5 (...		Potri.010G066900 [exp]	7.14	0.9676	Pt-PGR5.1
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Potri.005G254100 [exp]	9.00	0.9744	Pt-GAPB.2
AT1G64680			unknown protein		Potri.001G083300 [exp]	9.53	0.9782

Compare expression of checked genes

Potri.003G222200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.