Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-LEN1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13470 1033 / 0 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT1G55490 1009 / 0 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT5G56500 1005 / 0 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT1G26230 743 / 0 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT2G28000 499 / 5e-171 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT3G23990 470 / 8e-160 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT2G33210 469 / 2e-159 HSP60-2 heat shock protein 60-2 (.1.2) AT3G13860 437 / 2e-147 HSP60-3A heat shock protein 60-3A (.1) AT5G18820 429 / 6e-144 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 63 / 3e-10 TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G002500 [exp] 1157 / 0 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.010G135100 [exp] 744 / 0 AT1G26230 813 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Potri.004G213400 [exp] 522 / 3e-180 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.009G009300 [exp] 513 / 1e-176 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.002G252900 [exp] 484 / 3e-165 AT3G23990 995 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G173900 [exp] 479 / 1e-163 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.001G054400 [exp] 478 / 6e-163 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.015G122800 [exp] 472 / 1e-160 AT5G18820 821 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.003G039475 [exp] 384 / 3e-126 AT3G13860 810 / 0.0 heat shock protein 60-3A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010321 [exp] 1076 / 0 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10013404 [exp] 1072 / 0 AT3G13470 1037 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10030917 [exp] 717 / 0 AT1G26230 863 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Lus10037386 [exp] 496 / 4e-170 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10011902 [exp] 484 / 2e-165 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011898 [exp] 482 / 2e-164 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10022832 [exp] 481 / 3e-164 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011770 [exp] 465 / 1e-156 AT3G23990 994 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10041329 [exp] 448 / 1e-151 AT2G28000 845 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10038352 [exp] 440 / 5e-148 AT5G18820 767 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.003G222400.1 pacid=42786537 polypeptide=Potri.003G222400.1.p locus=Potri.003G222400 ID=Potri.003G222400.1.v4.1 annot-version=v4.1 ATGGCATCGACTTTTACGGCCATGTCCTCGGTTGGAACCTTGGCTGCTCCCAATGGCCGTGTTATGGATAAGAAGTTTGTATTTTCTTCAAACAAGTTGT CATCTTTCGCTTCCATTTCTGCAAGTCGATTTGGTAGGCCACAGAATGTAGTTCTACCAAGATCACGTCCTCTCAAGGTTAATGCTGCCAAGGAGCTGCA CTTCAACAAGGACGGTTCTGCAATTAAGAAATTGCAAACTGGTGTGAACAAGCTTGCAGATTTAGTTGGGGTTACCCTTGGACCTAAAGGCCGGAATGTT GTTCTTGAGAGCAAATACGGTTCGCCTAAAATTGTTAATGATGGCGTGACTGTTGCTAAAGAGGTTGAATTGGAGGATCCGGTTGAGAATATTGGTGCTA AGTTAGTGAGACAAGCTGCTGCCAAGACAAATGACTTGGCTGGTGATGGGACTACAACATCTGTTGTTCTTGCGCAAGGCCTTATTGCAGAAGGTGTCAA GGTTGTGGCTGCTGGTGCAAACCCTGTTTTAATCACTAGAGGCATTGAGAAGACCACAAGAGCTCTCGTAAACGAACTTAAGTTGATGTCGAAAGAGGTT GAAGACAGTGAACTTGCAGATGTGGCAGCTGTTAGTGCTGGGAACAACTATGAAGTTGGGAATATGATAGCTGAAGCTATGAGCAAAGTTGGTCGGAAGG GAGTGGTCACCCTTGAAGAGGGAAAGAGTGCTGATAACAGCCTCTATGTTGTTGAGGGAATGCAGTTTGACCGTGGTTATATCTCACCTTACTTTGTCAC TGATAGTGAAAAAATGTCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTTGACAAGAAAATAACAAACGCAAGAGATCTAATCTCCATTTTGGAAGAT GCAATTAGAGCTGGATATCCAGTTTTGATAATTGCTGAAGACATTGAACAAGAAGCTTTAGCAACTCTTGTTGTCAATAAGCTTAGGGGTGCTTTGAAGA TTGCTGCCCTCAAAGCTCCTGGTTTTGGGGAACGGAAAAGTCAGTACCTTGATGACATTGCTATTCTGACTGGAGGAACTGTTGTCAGAGAAGAGGTGGG GCTTGCCTTGGACAAAGTAGGCAAAGAGGTCTTGGGACATGCTTCTAAAGTGGTTCTTACCAAGGACACAACCACCATTGTTGGTGACGGAAGCACCCAA GAAGCAGTAAATAAGAGAGTTGCTCAAATTAGAAATCTTATCGAGGCTGCTGAACAAGACTATGAAAGGGAGAAACTCAATGAAAGAATTGCTAAGCTGT CCGGCGGTGTTGCAGTGATACAGGTTGGAGCACAAACCGAGACAGAGCTTAAAGAAAAGAAACTGAGAGTTGAAGATGCTCTTAATGCAACCAAGGCAGC CGTTGAGGAAGGTATTGTGGTTGGTGGTGGATGCACCCTGCTGAGACTGGCATCAAAGGTGGATGCTATCAAGGACAGTCTCGAGAACGATGAAGAAAAG GTGGGAGCAGACATTGTAAAGAGAGCTCTGAGCTACCCCCTGAAGTTAATTGCCAAAAATGCTGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCTCT CAACTGACAATCCTAAATTTGGATACAATGCTGCAACTGGAAATTATGAAGATCTGATGGCTGCTGGAATCATTGATCCAACAAAGGTGGTCAGATGTTG CCTGGAGCATGCATCATCGGTAGCAAAGACGTTCTTGATGTCCGACTGTGTAGTTGTTGAGATTAAGGAGCCTGAATCAGTGCCTGCTGGCAACCCCATG GATAACTCAGGATATGGGTACTAG
AA sequence Show only first row Show all	>Potri.003G222400.1 pacid=42786537 polypeptide=Potri.003G222400.1.p locus=Potri.003G222400 ID=Potri.003G222400.1.v4.1 annot-version=v4.1 MASTFTAMSSVGTLAAPNGRVMDKKFVFSSNKLSSFASISASRFGRPQNVVLPRSRPLKVNAAKELHFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNV VLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTRALVNELKLMSKEV EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSADNSLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKITNARDLISILED AIRAGYPVLIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVVREEVGLALDKVGKEVLGHASKVVLTKDTTTIVGDGSTQ EAVNKRVAQIRNLIEAAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDSLENDEEK VGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSTDNPKFGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPESVPAGNPM DNSGYGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Potri.003G222400 [exp]	0	1	Pt-LEN1.1
AT4G01200			Calcium-dependent lipid-bindin...		Potri.002G166400 [exp]	1.73	0.9373
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Potri.004G224400 [exp]	2.00	0.9443	Pt-HSC70.1
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Potri.017G090600 [exp]	2.44	0.9392
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Potri.004G131100 [exp]	2.82	0.9035
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Potri.006G138600 [exp]	3.16	0.9251	CPN21.1
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Potri.002G117800 [exp]	3.46	0.9122
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Potri.004G213400 [exp]	3.46	0.9273	SLP.2
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Potri.005G204800 [exp]	3.74	0.8653
AT1G02020			nitroreductase family protein ...		Potri.002G146100 [exp]	5.29	0.9081
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.014G151200 [exp]	7.41	0.8865	TXR1.1

Compare expression of checked genes

Potri.003G222400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.