Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07100 65 / 4e-13 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT1G29860 64 / 7e-13 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT5G56270 62 / 4e-12 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT4G18170 62 / 6e-12 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT5G26170 60 / 6e-12 WRKY ATWRKY50, WRKY50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) AT4G26640 61 / 1e-11 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G30250 61 / 1e-11 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G03340 60 / 2e-11 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT5G64810 58 / 3e-11 WRKY ATWRKY51, WRKY51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) AT1G55600 60 / 4e-11 WRKY MINI3, ATWRKY10, WRKY10 MINISEED 3, WRKY DNA-binding protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G002400 [exp] 150 / 9e-48 AT2G47260 50 / 4e-08 WRKY DNA-binding protein 23 (.1) Potri.001G352400 [exp] 67 / 9e-14 AT1G29860 184 / 1e-56 WRKY DNA-binding protein 71 (.1) Potri.011G079300 [exp] 64 / 5e-13 AT1G29860 186 / 2e-57 WRKY DNA-binding protein 71 (.1) Potri.002G059100 [exp] 63 / 1e-12 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1) Potri.002G193000 [exp] 63 / 2e-12 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.005G203200 [exp] 63 / 2e-12 AT4G18170 187 / 3e-57 WRKY DNA-binding protein 28 (.1) Potri.014G118200 [exp] 62 / 3e-12 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.007G078200 [exp] 61 / 4e-12 AT4G39410 189 / 4e-59 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Potri.019G053900 [exp] 62 / 7e-12 AT5G56270 154 / 5e-40 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027139 [exp] 66 / 2e-13 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10032887 [exp] 66 / 3e-13 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10004537 [exp] 61 / 9e-12 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10012027 [exp] 61 / 1e-11 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10020215 [exp] 60 / 4e-11 AT5G56270 276 / 3e-84 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10016595 [exp] 59 / 7e-11 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10020832 [exp] 58 / 8e-11 AT4G39410 169 / 3e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Lus10042243 [exp] 58 / 1e-10 AT5G07100 323 / 5e-105 WRKY DNA-binding protein 26 (.1.2) Lus10036800 [exp] 58 / 1e-10 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1) Lus10037785 [exp] 58 / 1e-10 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G222501.1 pacid=42785797 polypeptide=Potri.003G222501.1.p locus=Potri.003G222501 ID=Potri.003G222501.1.v4.1 annot-version=v4.1 ATGTACCCGGCCCTACCGCCCTTTAGATTCTCCATCAAAGCCACTATATACGAGATTCATCCAATGGAAACTGATCAGGAGGGTAGAGAAGAGCAGGATA CAGATCGAGGAGGGCAGAGATTGGTGCTGCCAGAAGATGGGCATGGATGGAAGAAATATGGCCAGAAGTTCATAAAAAAAATTGGAAAATTCCGGAGCTA TTTTAAATGCCAGAAGCAGAATTGTGTGGCAAAGAAGAGAGTCGAGTGGTCCAACCCTGATTATATTCGAATATGGTACGAGGGATCTCACAATCATGCC TCATCTATACAAGGGACTTCTTCCTCCGCTGCTGCAAATCAGTACAGCTTGTACGCTCAAGTTTTTGGATCAGATCAACCAGCTGCTTCACGCACGCATC ATCAAGATGCTTAA
AA sequence Show only first row Show all	>Potri.003G222501.1 pacid=42785797 polypeptide=Potri.003G222501.1.p locus=Potri.003G222501 ID=Potri.003G222501.1.v4.1 annot-version=v4.1 MYPALPPFRFSIKATIYEIHPMETDQEGREEQDTDRGGQRLVLPEDGHGWKKYGQKFIKKIGKFRSYFKCQKQNCVAKKRVEWSNPDYIRIWYEGSHNHA SSIQGTSSSAAANQYSLYAQVFGSDQPAASRTHHQDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Potri.003G222501 [exp]	0	1
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G013700 [exp]	4.12	0.9142
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.010G108800 [exp]	12.88	0.9104
AT5G49600			Protein of unknown function, D...		Potri.010G149100 [exp]	14.00	0.8909
AT5G36930			Disease resistance protein (TI...		Potri.013G097050 [exp]	18.43	0.9018
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019300 [exp]	21.93	0.8937
					Potri.001G131600 [exp]	23.62	0.9102
					Potri.017G111000 [exp]	31.08	0.8994
					Potri.012G053301 [exp]	38.67	0.8984
AT4G20800			FAD-binding Berberine family p...		Potri.011G155900 [exp]	41.78	0.9012
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G025400 [exp]	42.21	0.8959

Compare expression of checked genes

Potri.003G222501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.