Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56460 585 / 0 Protein kinase superfamily protein (.1) AT5G01020 436 / 3e-152 Protein kinase superfamily protein (.1) AT2G05940 411 / 7e-142 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT2G07180 405 / 5e-140 Protein kinase superfamily protein (.1.2) AT2G26290 396 / 1e-136 ARSK1 root-specific kinase 1 (.1) AT5G15080 396 / 1e-135 Protein kinase superfamily protein (.1) AT1G61590 394 / 1e-135 Protein kinase superfamily protein (.1) AT3G28690 389 / 1e-134 Protein kinase superfamily protein (.1.2.3) AT5G35580 384 / 1e-130 Protein kinase superfamily protein (.1) AT3G01300 378 / 2e-128 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G002300 [exp] 664 / 0 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 442 / 2e-154 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 439 / 2e-153 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 424 / 4e-147 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 419 / 5e-145 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 413 / 3e-142 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 411 / 1e-141 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 408 / 2e-140 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 405 / 2e-140 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013406 [exp] 610 / 0 AT5G56460 630 / 0.0 Protein kinase superfamily protein (.1) Lus10010319 [exp] 596 / 0 AT5G56460 613 / 0.0 Protein kinase superfamily protein (.1) Lus10036762 [exp] 426 / 1e-147 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 412 / 1e-141 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 411 / 4e-141 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10038087 [exp] 400 / 7e-138 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10006643 [exp] 400 / 8e-138 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10033294 [exp] 394 / 2e-136 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10034897 [exp] 398 / 4e-136 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10008110 [exp] 395 / 1e-135 AT2G05940 486 / 2e-170 RPM1-induced protein kinase, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G222600.2 pacid=42786974 polypeptide=Potri.003G222600.2.p locus=Potri.003G222600 ID=Potri.003G222600.2.v4.1 annot-version=v4.1 ATGGGAAATTGTTGTTGTAGAAGGGAGCCTTCTGTTTACAATGAAAAATCAGAGTCTCCGAAAGACCAAAGTCCATCAGGAAGACCCACAAAGGATGATA GAAAGCTACCTTCAAATCCAGAAGAAGTAGAGGACCTGCGTCGTGATTCAGCGGCAAATCCATTGATTGCTTTTACGTTCGCTGAACTAAAATTAATCAC TGGAAATTTTAGGCAAGATCATTTGCTGGGCGGAGGAGGATTTGGGAGTGTTTATAAAGGGCTCATTACAGAGGATTTGAGAGAGGGGCTTCAGCCCCTT CAAGTTGCCGTTAAGGTTCATGATGGTGATAACAGTTACCAGGGCCATAGAGAATGGCTGGCAGAAGTCATATTCCTGGGGCAGCTTTCTCATCCAAACC TGGTGAAATTGATTGGATATTGCTGTGAGGACGAACAACGGGTTCTGATATACGAGTATATGTCTCGGGGAAGCGTGGAAAACATCCTGTTCTCAAGAGT ATTGCTTACTCTTCCATGGTCAATTAGAATGAAGATTGCATATGGTGCAGCAAAAGGACTTGCCTTTCTACATGAAGCTGAAAAACCTGTCATCTATCGC GATTTTAAGACATCTAATATTCTCTTAGACCAGGACTACAATGCAAAGCTCTCTGACTTTGGCCTTGCAAAAGATGGACCTATAGGAGACAAAACTCATG TTTCCACTCGCATAATGGGGACTTACGGGTATGCGGCACCTGAATATATAATGACAGGCCATTTGACTCCAAGAAGTGATGTATACAGTTTTGGTGTTGT TCTTCTTGAACTTCTGACAGGAAGAAAATCTCTAGACAAATCACGACCAGCCCGTGAGCAGAACCTAACGGACTGGGCTATTCCTTTGCTTAAAGAGAAG AAGAAATTGCTCAAAATCGTGGATCCTAGATTAGAAGGAGACTATCCTATTAAAGGAGTTCACAAGGCAGCAATGCTAGCTTATCATTGCTTGAACCGAA ATCCGAAAGCAAGGCCTCTAATGCGAGATATCGTTGATTCCTTGGAACCTTTACTGGAACCTGAAGATGTTCAGAACGAAAAACCTGTGCTCACTGTGAT TCATGGCGTCGCAGATGGCCAGTTAAAGGGAAAAGAAGGTTCAATGTAA
AA sequence Show only first row Show all	>Potri.003G222600.2 pacid=42786974 polypeptide=Potri.003G222600.2.p locus=Potri.003G222600 ID=Potri.003G222600.2.v4.1 annot-version=v4.1 MGNCCCRREPSVYNEKSESPKDQSPSGRPTKDDRKLPSNPEEVEDLRRDSAANPLIAFTFAELKLITGNFRQDHLLGGGGFGSVYKGLITEDLREGLQPL QVAVKVHDGDNSYQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEQRVLIYEYMSRGSVENILFSRVLLTLPWSIRMKIAYGAAKGLAFLHEAEKPVIYR DFKTSNILLDQDYNAKLSDFGLAKDGPIGDKTHVSTRIMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDKSRPAREQNLTDWAIPLLKEK KKLLKIVDPRLEGDYPIKGVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLLEPEDVQNEKPVLTVIHGVADGQLKGKEGSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56460			Protein kinase superfamily pro...		Potri.003G222600 [exp]	0	1
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.007G002500 [exp]	1.41	0.6694
AT5G06560			Protein of unknown function, D...		Potri.016G065200 [exp]	8.30	0.7121
AT5G64500			Major facilitator superfamily ...		Potri.001G286600 [exp]	8.77	0.6270
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.001G442600 [exp]	11.66	0.6490
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G031700 [exp]	15.23	0.6159	Pt-NHX2.2
AT1G59650		CW14	Protein of unknown function (D...		Potri.017G074800 [exp]	22.24	0.6112
AT3G54850		ATPUB14	plant U-box 14 (.1)		Potri.010G226500 [exp]	22.44	0.5990
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.008G045300 [exp]	23.81	0.6688
AT4G39140			RING/U-box superfamily protein...		Potri.004G158400 [exp]	26.72	0.6008
AT5G64060	NAC	ANAC103	NAC domain containing protein ...		Potri.005G058900 [exp]	29.24	0.6053

Compare expression of checked genes

Potri.003G222600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.