Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13460 521 / 2e-178 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT1G55500 463 / 1e-156 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT5G61020 363 / 2e-119 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT3G03950 306 / 6e-98 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3) AT3G13060 297 / 3e-92 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT1G79270 275 / 7e-85 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT1G48110 276 / 3e-84 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT3G17330 269 / 6e-83 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT5G58190 263 / 2e-80 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT1G09810 248 / 2e-75 ECT11 evolutionarily conserved C-terminal region 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G002000 [exp] 910 / 0 AT3G13460 546 / 0.0 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.019G034300 [exp] 371 / 2e-121 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.007G002800 [exp] 316 / 6e-99 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.014G001000 [exp] 306 / 4e-95 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G056100 [exp] 290 / 7e-90 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.010G175500 [exp] 289 / 3e-89 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.008G080800 [exp] 287 / 9e-89 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1) Potri.008G100200 [exp] 275 / 1e-82 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.006G079900 [exp] 271 / 4e-82 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002624 [exp] 362 / 2e-117 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10020269 [exp] 350 / 3e-111 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10033335 [exp] 294 / 1e-90 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10034792 [exp] 293 / 2e-90 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10015778 [exp] 258 / 2e-80 AT3G13060 360 / 5e-120 evolutionarily conserved C-terminal region 5 (.1.2) Lus10027582 [exp] 264 / 1e-79 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10037364 [exp] 263 / 1e-79 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Lus10035790 [exp] 271 / 4e-79 AT1G09810 338 / 6e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10037028 [exp] 261 / 9e-79 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2) Lus10017111 [exp] 260 / 2e-77 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF04146 [poplar] [flax] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Potri.003G222700.1 pacid=42786125 polypeptide=Potri.003G222700.1.p locus=Potri.003G222700 ID=Potri.003G222700.1.v4.1 annot-version=v4.1 ATGGCTACCCTTTCATCTTCTGCTGACCAAACTTCGGATTTGCTGCAGAAGTTATCCTTGGACTCACAAACAAAGACTTTGGAGATGCCTGAGCCCACCA GCAAGATCCAGCCAAGTGACCGGTCTGTGACCCCAGTGCTATCCAACTTCATGGATCCAACTGTGTGCTATCTTCCTAATGGTTATCAATCCTATTACTA TGGAGGCTATAATGGGGCTGGGGAGTGGGACGACTATTCAAAGTATCTGAACCCAGAAGGAGTAGATATGGTTTCTGGGGTTTATGGGGATAACGGATCT GCTATGTATCCTCATGGTTATTGGTATGGACCCTATAGCCCATATTCACCAGCAGCTTCTCCGGTTCCCACTATGGGAAATGATGGTCAATTATATGGTC CTCAGCACTACCAATATCCTCCTCCCTACTTCCAGCCATTGACTCCAAGTGGTGAGCCCTTCACACCCAGCCATGTAGCCCCTTCCCAAGGCGATCTTTC TATCTCAACAGCTACTGACCAGAAGCCTCTGCCTGTGGAGACAGCTAAAGAAAATTCTAATGGCATTGCAAATGGTGTGGATGTTAAGGGAAGCAACGGT GCAGTTCCCTACAAGCCCAAGTATCAAAATTCATATGGAAGGGGTGGTTTTACAAAGGGACTTCCTGCTTCTGGTTACAAGGATCTGAAATCTCGTTTTG ATAGGTTACAACCTGATAGCCCATTGCTGGATACCTCTGTGCTTTCCAGTGGGCTGTACAAAAACACTGAGATTTCTTCTTCATTTTCAAAGGCTGGCAA TGCTCCATCTTCAAGGAACCAGAATTTCCATCAAAATTCTCATTTCATGGGATGGCAGCACCCTGCTCTGGCACCAGGCGTGGGTTCAACTCATGGATAT ATGAATAGGATGTATCCAAACAAATTCTATGGTCAATATGGAAACGGTTTCAAATCTGGTATGGGCTTTGGATCTGGTGGGTATAATGCAGGAATAAATG GACATGGGTGGTTAGCTATCGACAGCAAATACAAACCCAAGGGGCGAGGCAATGGTTATTTTGGTTATCACAATGACAGCATTGATGGTTTGAATGAGCT GAACAGAGGACCTAGGGCCAAGGGATATTTCAAAAACCAAAAGGGTTTTGTTCCTGCCACAGTTGCAGTCAAGGGGCAGAGTGTGCCATCAAGTGATACT AATGTTGAGGAGAAGGATAAGACAACTGTGGTTCCGGACCGAGAACAATATAACAAAGCAGATTTCCCTGAGGAATATGATAATGCTAAATTTTTCATCA TCAAATCTTACAGCGAGGATGATGTGCATAAGTGCATTAAATACAACGTCTGGGCTAGCACACCTAATGGTAACAAGAAGCTGGATGCGGCATACCAAGA GGCTGAGCAGAAATCTGGTGGCTGTCCTGTGTTTCTATTGTTCTCGGTTAATACCAGTGGGCAATTTGTAGGACTGGCAGAGATGACGGGGCGAGTTGAT TTTGACAAGAGTGTCGAGTATTGGCAACAGGACAAGTGGACAGGCTATTTCCCTGTGAAGTGGCACATTGTGAAGGATGTCCCCAACAGTTTCTTGAAGC ATATTACCCTCGAGAACAACGAGAACAAACCAGTCACCAACAGCAGAGACACTCAAGAGGTCAAGTTAGAGCAAGGGCTTAAATTGATAAAAATATTCAA GGATCATAGCAGCAAAACATGCATCTTAGATGATTTTGTGTTTTATGAGGATCGGGAGAAGATGATCCAGGAGAAAAAGGCTAAGCAACAGCAGCTCAAG AAACAGGTGTGGGATGGAAAGCCATGTGAAGAAAAGAAAGAGATAGCAAATGGTTCATAG
AA sequence Show only first row Show all	>Potri.003G222700.1 pacid=42786125 polypeptide=Potri.003G222700.1.p locus=Potri.003G222700 ID=Potri.003G222700.1.v4.1 annot-version=v4.1 MATLSSSADQTSDLLQKLSLDSQTKTLEMPEPTSKIQPSDRSVTPVLSNFMDPTVCYLPNGYQSYYYGGYNGAGEWDDYSKYLNPEGVDMVSGVYGDNGS AMYPHGYWYGPYSPYSPAASPVPTMGNDGQLYGPQHYQYPPPYFQPLTPSGEPFTPSHVAPSQGDLSISTATDQKPLPVETAKENSNGIANGVDVKGSNG AVPYKPKYQNSYGRGGFTKGLPASGYKDLKSRFDRLQPDSPLLDTSVLSSGLYKNTEISSSFSKAGNAPSSRNQNFHQNSHFMGWQHPALAPGVGSTHGY MNRMYPNKFYGQYGNGFKSGMGFGSGGYNAGINGHGWLAIDSKYKPKGRGNGYFGYHNDSIDGLNELNRGPRAKGYFKNQKGFVPATVAVKGQSVPSSDT NVEEKDKTTVVPDREQYNKADFPEEYDNAKFFIIKSYSEDDVHKCIKYNVWASTPNGNKKLDAAYQEAEQKSGGCPVFLLFSVNTSGQFVGLAEMTGRVD FDKSVEYWQQDKWTGYFPVKWHIVKDVPNSFLKHITLENNENKPVTNSRDTQEVKLEQGLKLIKIFKDHSSKTCILDDFVFYEDREKMIQEKKAKQQQLK KQVWDGKPCEEKKEIANGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.003G222700 [exp]	0	1
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.001G002000 [exp]	1.00	0.9104
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Potri.009G105300 [exp]	1.41	0.8986
AT3G56680			Single-stranded nucleic acid b...		Potri.016G032500 [exp]	1.73	0.8770
AT3G59800			unknown protein		Potri.017G010100 [exp]	2.00	0.8666
AT3G04470			Ankyrin repeat family protein ...		Potri.019G019700 [exp]	5.56	0.7975
AT1G11650		ATRBP45B	RNA-binding (RRM/RBD/RNP motif...		Potri.004G017200 [exp]	7.34	0.8385
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.012G134600 [exp]	7.48	0.8386	Pt-CDPK5.3
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.001G207000 [exp]	9.48	0.8546
AT1G17100			SOUL heme-binding family prote...		Potri.015G080000 [exp]	11.22	0.8282
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	12.96	0.8490

Compare expression of checked genes

Potri.003G222700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.