Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55510 632 / 0 BCDH BETA1, BCDHBETA1 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) AT3G13450 628 / 0 DIN4 DARK INDUCIBLE 4, Transketolase family protein (.1) AT5G50850 219 / 2e-68 MAB1 MACCI-BOU, Transketolase family protein (.1) AT1G30120 211 / 6e-65 PDH-E1 BETA, PDH-E1BETA pyruvate dehydrogenase E1 beta (.1) AT2G34590 204 / 7e-62 Transketolase family protein (.1) AT4G15560 50 / 2e-06 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 43 / 0.0004 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061400 [exp] 210 / 8e-65 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G166400 [exp] 208 / 6e-64 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.017G076500 [exp] 201 / 1e-60 AT2G34590 671 / 0.0 Transketolase family protein (.1) Potri.004G129800 [exp] 196 / 1e-58 AT2G34590 634 / 0.0 Transketolase family protein (.1) Potri.006G171700 [exp] 52 / 5e-07 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013401 [exp] 631 / 0 AT1G55510 622 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10010324 [exp] 624 / 0 AT1G55510 619 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10032550 [exp] 212 / 6e-66 AT5G50850 613 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10032549 [exp] 216 / 2e-65 AT5G50850 628 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10043191 [exp] 218 / 2e-63 AT5G50850 635 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10038505 [exp] 201 / 5e-61 AT2G34590 693 / 0.0 Transketolase family protein (.1) Lus10023304 [exp] 199 / 8e-60 AT2G34590 687 / 0.0 Transketolase family protein (.1) Lus10039361 [exp] 52 / 2e-08 AT5G50850 135 / 9e-40 MACCI-BOU, Transketolase family protein (.1) Lus10015519 [exp] 47 / 1e-05 AT4G15560 578 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015517 [exp] 47 / 2e-05 AT4G15560 1020 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [poplar] [flax] THDP-binding PF02779 [poplar] [flax] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [poplar] [flax] TKC_like PF02780 [poplar] [flax] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G222800.2 pacid=42787329 polypeptide=Potri.003G222800.2.p locus=Potri.003G222800 ID=Potri.003G222800.2.v4.1 annot-version=v4.1 ATGGTTATGGCAACTAGTTTGAGGAGATGTGGAAGAAGATTGGTTTCTTCTGTTTTCAATAACAGGGAATTCTCAACCACTTGTCAAGGCAACAAGGTTA TTCAACAACAACATGAGCAACTACAAGAAACTGGGAAATCATTGAATCTTTGCTCTGCCATCAATCAAGCTCTCCATATCGCATTAGAAACCGACCCTCG CTCGTATGTGTTTGGGGAAGATGTGAGCTTTGGTGGGGTATTTCGATGCACAACAGGACTAGCTGAAAAATTTGGTAAAAAACGAGTTTTCAATACCCCT CTTTGTGAACAGGGCATTGTTGGGTTTGGCATAGGCCTGGCAGCAATGGATAATCGTGCTATAGCAGAAATTCAGTTTGCGGATTATATCTTTCCTGCTT TTGATCAGATTGTTAATGAGGCTGCAAAGTTCAGATATCGGAGCGGGAATCAATTTAATTGTGGAGGTTTAACCATAAGAACACCATATGGGGCTGTGGG CCATGGTGGACATTATCACTCTCAATCCCCTGAAGCTTTCTTTTGTCATGTTCCTGGTATCAAAGTGGTTGTTCCACGAAGTCCAAGAGAAGCAAAAGGA TTATTACTGTCATGCATACGTGATACAAACCCTGTTATCTTTTTTGAACCAAAGTGGCTTTATCGTTTGGCAGTAGAAGAGGTTCCTGAGCATGATTATA TGTTGCCTTTGTCAGAGGCAGAGGTGATCCGAGAGGGCAGTGACATAACACTAGTTGGTTGGGGAGCACAGCTGTCTATTATGGAGCAGGCCTGTTTTGA TGCTGAGAAGGAGGGAATTTCTTGTGAACTGATAGATCTCAAAACTCTAATACCCTGGGACAAAGAAACAGTAGAAGCATCTGTGAGAAAGACGGGAAAG CTCCTTATAAGTCATGAAGCTCCAGTTACTGGAGGTTTTGGTGCTGAAATTTCTGCGTCTATCGTTGAACGTTGCTTCCTAAGGTTAGAAGCCCCAGTAG CCAGAATTTGCGGGCTGGATACACCCTTTCCTCTAGTTTTTGAACCCTTTTATGTACCGACCAAGAACAAGATAGTGGATGCGATCAAAGCAACAGTAAA TTACTAG
AA sequence Show only first row Show all	>Potri.003G222800.2 pacid=42787329 polypeptide=Potri.003G222800.2.p locus=Potri.003G222800 ID=Potri.003G222800.2.v4.1 annot-version=v4.1 MVMATSLRRCGRRLVSSVFNNREFSTTCQGNKVIQQQHEQLQETGKSLNLCSAINQALHIALETDPRSYVFGEDVSFGGVFRCTTGLAEKFGKKRVFNTP LCEQGIVGFGIGLAAMDNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRTPYGAVGHGGHYHSQSPEAFFCHVPGIKVVVPRSPREAKG LLLSCIRDTNPVIFFEPKWLYRLAVEEVPEHDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACFDAEKEGISCELIDLKTLIPWDKETVEASVRKTGK LLISHEAPVTGGFGAEISASIVERCFLRLEAPVARICGLDTPFPLVFEPFYVPTKNKIVDAIKATVNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Potri.003G222800 [exp]	0	1
AT1G29120			Hydrolase-like protein family ...		Potri.011G065700 [exp]	1.41	0.9024
AT5G64460			Phosphoglycerate mutase family...		Potri.009G080300 [exp]	1.73	0.9187
AT1G03950		VPS2.3	vacuolar protein sorting-assoc...		Potri.002G035900 [exp]	3.46	0.8865
AT1G73980			Phosphoribulokinase / Uridine ...		Potri.015G055400 [exp]	3.74	0.8787
AT4G01995			unknown protein		Potri.002G194500 [exp]	4.89	0.8998
AT3G03560			unknown protein		Potri.013G073400 [exp]	8.12	0.8563
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	8.77	0.8736
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G106700 [exp]	9.48	0.8714
AT5G53850			haloacid dehalogenase-like hyd...		Potri.001G399000 [exp]	14.14	0.8441
AT5G06060			NAD(P)-binding Rossmann-fold s...		Potri.008G059100 [exp]	18.38	0.8618

Compare expression of checked genes

Potri.003G222800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.