Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56360 587 / 0 PSL4 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) AT2G42390 164 / 9e-47 protein kinase C substrate, heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001700 [exp] 948 / 0 AT5G56360 539 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.013G060266 [exp] 266 / 5e-85 AT5G56360 218 / 3e-67 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.013G060332 [exp] 234 / 5e-73 AT5G56360 227 / 8e-71 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.019G092100 [exp] 160 / 1e-45 AT2G42390 204 / 6e-67 protein kinase C substrate, heavy chain-related (.1) Potri.013G124000 [exp] 160 / 2e-45 AT2G42390 215 / 3e-71 protein kinase C substrate, heavy chain-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013398 [exp] 712 / 0 AT5G56360 611 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10010326 [exp] 694 / 0 AT5G56360 604 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10026874 [exp] 249 / 1e-73 AT5G56360 236 / 1e-68 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10002183 [exp] 152 / 2e-42 AT2G42390 206 / 2e-67 protein kinase C substrate, heavy chain-related (.1) Lus10039901 [exp] 90 / 9e-19 AT1G06260 346 / 4e-117 Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12999 [poplar] [flax] PRKCSH-like Glucosidase II beta subunit-like CL0226 [poplar] [flax] M6PR PF13015 [poplar] [flax] PRKCSH_1 Glucosidase II beta subunit-like protein
Representative CDS sequence Show only first row Show all	>Potri.003G223000.6 pacid=42786820 polypeptide=Potri.003G223000.6.p locus=Potri.003G223000 ID=Potri.003G223000.6.v4.1 annot-version=v4.1 ATGGAAGTAGAGAGGAGGAGCTTCTGCTTCTTCTTCTTCTTATTAGTTTTTCCGGTTTTTTTTGGAGTGCTGTGTGGATCAGCATCAGCATCACCTGTTG TTCCTAAAAACCCTTTTCTTGGAATCCCTCCTCAAGATGAGAATTATTACAAGACATCTTCAAATACTATAAAATGCAAAGATGGATCCGCTACTTTCAC CAAAGCTCAGCTTAACGATGACTTCTGTGATTGCCCTGATGCAACCGACGAGCCTGGCACATCGGCATGCCCTGGTGGGAAATTCTTTTGTAGAAATGCA GGACATGCTCCTCTTTTCTTATTTTCTTCAAGAGTCAATGACGGCATCTGCGATTGTTGTGATGGGAGTGATGAGTATGATGGCCAAGTTAAGTGTCCAA ATACATGCTGGGAAGCTGGCAAAGTGGCTAGAGATAAGTTGAAGAAAAAGATTGCCACGTATAAGGAAGGGGTTGCTTTGAGAAATAAAGAAGTTGAACA AGCAAAGGCGGCGATCGCCAAAGACGAGGCTGAACTATCCAAGCTAAAGAATGAGGAGAAAGTGCTGAAAGGGCTCGTTCAACAGCTTAAAGAGCTTAAA GAACAGATAGAGAAGGCAGAAGAGAGAGAACGTTTGCAGAAAGAAAAGGAAGAGAAAGAAAGGAAAGAAGCTGAAGAAAAGGCCACTGGGGAGAAAAGTG CCATTCAGAGGGAAGCTAACGAAGGACAGATTGAGGAGAAAATTGACAACGAAGACAAAGATGTGGAAAGTGCTCATGATGAAATCGGTGTTTTGGATGA TTCTCCTGCACATCAGGATGTTGTGGACGAGTATGCTGATCATGGAGCTGAAGATGAAACTAGCGGTGATTCCAAAATTGAAGGATCTCCGGTTAGCAAA GTGGAGCAGCATGAGGGACAAAAGGATGAAGAGTCTGTCTCAACAAAAACTAAGGATGACTCTACACATGTGCATGAAATTAATCATGATGCTGGAAATG AGGTGTCTCATGATCAACCTATGGAAGATGGGAAAGATGGATCCACTGATGCTGAAGGGTTGTCAAAGGAAGAGTTGGGCCGCCTTGTTGCTTCTCGCTG GACAGGAAATCCTGAGAAAGAAACTGAGGGAGTTAGTGATACAATGGACAATGACCATGAAGACAATGAAAAGATGGCCCAGGACACTCACGATGAGGAA TATGATGGCTATGCTTCAGAAACTGATGATGACACTGGCAAGTATGATGATCCTGATGTAGAAGATGATATAGATGAGACTTATGAAGACGATGTTCATG ATGATGCTACTGCTTCTTATAAATCTGATGCTGAGGATGAAGTTGAATTTTCAGATACAACCTCCCCAGGTAATCCATCTTGGCTGGAGAAAATACAGCA AACCTTTAGGAGCATTCTACAAGCTTTCAAATTCTTCCAAACTCCAGTGGACAAATCAGAGGCTGCTCGTGTACGCAAGGAATATGACGAGTCCAGTGCT AAGTTGTCGAAAATACAGTCAAGGATATCAAGTTTGACAAAAAAGCTAAAACACGATTATGGGAAAGAGATGGAGTTCTATTCATTCTACGATCACTGTT TTGAGAGCAAACAGAACAAGTATGTTTACAAAGTCTGCCCTTTCAAAGAAGCTTCTCAGTTGGAGGGCCACTCAACAACTCGTTTGGGGCGTTGGAATGA ATTCGAGGATTCATACCGAGTTATGGTCTTTTCAAATGGGGATAAGTGCTGGAATGGACCTGATAGAAGTATGAAGGTCAGGCTAAGATGTGGATTGAAA AATGAGGTTACAGATGTAGATGAACCAAGCCGTTGCGAGTATGTGGCATTGCTATCTACCCCAGCACTTTGCATAGAAGAAAAGCTCAAGGAGCTGGAAA ATAAACTAGACTTGATGAACAAAGAACAGCCACAGAGCCACGATGAACTTTAA
AA sequence Show only first row Show all	>Potri.003G223000.6 pacid=42786820 polypeptide=Potri.003G223000.6.p locus=Potri.003G223000 ID=Potri.003G223000.6.v4.1 annot-version=v4.1 MEVERRSFCFFFFLLVFPVFFGVLCGSASASPVVPKNPFLGIPPQDENYYKTSSNTIKCKDGSATFTKAQLNDDFCDCPDATDEPGTSACPGGKFFCRNA GHAPLFLFSSRVNDGICDCCDGSDEYDGQVKCPNTCWEAGKVARDKLKKKIATYKEGVALRNKEVEQAKAAIAKDEAELSKLKNEEKVLKGLVQQLKELK EQIEKAEERERLQKEKEEKERKEAEEKATGEKSAIQREANEGQIEEKIDNEDKDVESAHDEIGVLDDSPAHQDVVDEYADHGAEDETSGDSKIEGSPVSK VEQHEGQKDEESVSTKTKDDSTHVHEINHDAGNEVSHDQPMEDGKDGSTDAEGLSKEELGRLVASRWTGNPEKETEGVSDTMDNDHEDNEKMAQDTHDEE YDGYASETDDDTGKYDDPDVEDDIDETYEDDVHDDATASYKSDAEDEVEFSDTTSPGNPSWLEKIQQTFRSILQAFKFFQTPVDKSEAARVRKEYDESSA KLSKIQSRISSLTKKLKHDYGKEMEFYSFYDHCFESKQNKYVYKVCPFKEASQLEGHSTTRLGRWNEFEDSYRVMVFSNGDKCWNGPDRSMKVRLRCGLK NEVTDVDEPSRCEYVALLSTPALCIEEKLKELENKLDLMNKEQPQSHDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.003G223000 [exp]	0	1
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.015G130701 [exp]	1.73	0.9148
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.018G145544 [exp]	6.92	0.8818
AT2G42040			unknown protein		Potri.006G193500 [exp]	7.07	0.8814
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.012G069900 [exp]	7.54	0.8999
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.001G001700 [exp]	7.93	0.8658
					Potri.001G306100 [exp]	11.48	0.8603
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Potri.002G060200 [exp]	13.03	0.8622
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Potri.004G168400 [exp]	14.17	0.8111
AT4G24760			alpha/beta-Hydrolases superfam...		Potri.012G090800 [exp]	16.24	0.8723
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.010G204900 [exp]	17.66	0.8069

Compare expression of checked genes

Potri.003G223000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.