Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55540 449 / 9e-130 EMB1011 Nuclear pore complex protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001201 [exp] 319 / 9e-99 AT1G55540 231 / 5e-69 Nuclear pore complex protein (.1.2) Potri.001G001250 [exp] 150 / 9e-40 AT1G55540 48 / 7e-06 Nuclear pore complex protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010334 [exp] 500 / 9e-147 AT1G55540 452 / 2e-130 Nuclear pore complex protein (.1.2) Lus10021859 [exp] 490 / 3e-143 AT1G55540 449 / 2e-129 Nuclear pore complex protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G223400.9 pacid=42784741 polypeptide=Potri.003G223400.9.p locus=Potri.003G223400 ID=Potri.003G223400.9.v4.1 annot-version=v4.1 ATGGGTTTTGGAAAAGAGGGAGAAACAAAAACAGAATTCGAAGAAGAGAAAGAAGGAGATCATGTTGAAAGCAGCGATTACTACTTCGATAAGATTGGGA AACCCATTCCCATCCTCTCTGATCAAACTGTTTCCCCTTTCCCTTTGCAAAACCCTCCTCTTCCCTCTCGCCCCCTCGCCCTCTCCCAATCCCGCAGTCT CATCTTCCTCGCCCATCCCTCCGGGTTTCTCGTTGCGAGGACTAAAGATGTCATGGATGCCGCTATGGATATTAAGGAAAAAGGAAGCTCTTCTTCTTCG TCCATTCAACATGTCAGTCTTGTGGATGTCCCTATTGGGAAAGTTCACATTTTGACACTCTCTACTGACTCCTCTACTCTTGCTGTTTCTGTTGCTGCTC ATATTCATTTCTTCCATGTCCATTCCCTTCTCGATAAGGAGCAAAAACCGTCCTTCTCTTGCTCGCTGAGTGAACCATCATCATCTACTGTCAAGGACAT TCAATGGAGAAGGAGACCGGACAATTCTTACCTTGTTCTTTCAAATCAGGGGAAGCTATATCATGGTGCTCTTGCTGCCGTCACCCATACTCTTAAACAC ATAACGGACAATGTTGATGCTGTTGAATGGAGTCTAAAAGGAAAATATATTGCTGTCGCAAGAGGGAGTCTTATCAGCATTTTGTCCTCAAATTTCAAGG AAAGGTTCAGTATATCCCTCCCATTCAGGTCATGGATTGCTGATAGTGATGATAACTGCACTGTCAAAGTGGACTCTATCAGATGGGTACGTCATGATAG TATCATTGTAGGATGCTTTCAGCAAACTGCAGATGGAAAGGAAGAAAATTACTTTCTTCAAGTAATCAGCAGAAAAGATGGCAAGATTTATGATAGTTCT TCCAAGCCAGTCGTGCTATCATTCTATGATCTATTTTCGGGTCTTGTTGACGATATTGTGCCCTATGGAAGTGGACCTTATTTATCCCTGGACTATTTAG AACAATGTGGGCTTGCAATTACAGCTAACAAGAAGAACACAGATCAGCACATTGTGTTGCTTGGTTGGTCAGTGGAGGATGAGATGAGTGAAACTGCAGT TATTGACATTGAACGAGATACTTGGCTCCCTAGGATTGAGCTTCAAGAAAACGGAGATGATAATTTGATCATGGGGCTCTGCGTTGACAGGGTTTCCCTC TATGGAAAAGTAAAAGTTGAAGTGGGGGTTGAAGAACAGAAAGAACTTTCACCCTACTGTGTTCTAATGTGTGTTACTCTTGAGGGAAAGCTTGTCATGT TCCAGGTTGCAAGTGCCACAGGAGCTAATATTCAACCAGAAGTTGATTCTTCCCTTGAGGATGAGGAAGAGGATATTGCTTTGGAACCTGAAGGGTGTGA TCAGTCTAACCTTTCTTCTGGGTTGCATGAAGAAACATTGGAAGAGATATCTCTAGGTCTTCAACCACAACATGCGAGCAACAAGGAACTACAGCTCAAT AAAGATGGTGGAATTCCTACACAGAAGGACCTTGTTCCTTCTGTCAAGAATGAGATTCCTGAAAAACTGGAAATAAAATCACTTTCTGTACAACAAAGTG CGAAATTAGGGCAGTCATCTTTGAAGGCCTCATTCCCAGAGATACCTAGGGAAGTTGGATCAAATGCTTTACCAGGTGTCCCATCTCAGTCATGGGCAAG TGGAAAAGTTACATTATCAGCTTCAACTTTGATTCAAGGAAATAGACCCGATTATAATAATGTTCAAGTTGGTGCTGCAAATGTTCCTAGTGACCTTGGC AGTAAATCTTTTTGCATGAAGGATACTGCTGGTCAATCAACTTCTTTCAATGCTTCTGTTAGACCAGCTCTTGACGGGGAACAAAGAGGTTCGATTGTGT CAGGGACAATTGAATCATTGCCTGCCTTTCGAAGCTCACAGTTGTCATCTCACGAAAATTTTGCTTCAGCCAGGTCTCCAAACCACAGACTCAAGTATTC AAAAGACAACTACAAAACTTCATCCCTGAGGAGTTCGGAGCCAAACTTATCAAAACAATTTGGTAATATTAAAGAGCTAGCCAAAGAGTTGGATACACTT CTGGAATGCATTGAAGAAAAAGGTGGTTTCAGGGATGCCTGCACTGTATTTCTGAGAGGCTCAGTTGAAGCTTTGGAGGAGGGCATGGGAACTCTCTCTG AAAATTGCAGAATGTGGAAGAGCGTGATGGATGAGCGGCTTGGAGAGATCCATCATCTTCTAGATAAAACTGTGCAAGTTTTGGCAAGGAAAATATATGT AGACGGTATTGTCAAGCAAGCTTCTGATAGCCAATATTTGGAACTCTGGAATCGCCAAAAGTTGAGCTCTGAACTTGAGTTGAAGCGGCGGTGTATACTA AAACTAAATCAGGAGTTGACTAATCAGTTGATTCAATTGGAGAGACACTTCAATACCCTTGAACTTCAAAGTTTTGGTGGAAATGCTGGATTTCACACAG ATCGGAGAACTTTGCAGATTAGATATATGCCTTCAAGACAACTTCAGTCCTTGCATAGTTTACAAAACACAATGAGTTCACAGTTAGCAGCTGCTGAACA ACTTTCTGAATGTCTCTCAAAACAAATGTCCATGCTGAGTATAGAGTCACCTGTAAGACAAAAGAATGTCAAGAAGGAACTTTTTGAAACAATTGGAATC CCGTATGATGCCTCTTTTAGCTCACCAGATGCAACGAAAGTTGGTGATACCACTTCATTGAAGAAACTTTTACTTTCTTCGGGTTCTGCTGCCACTAAAG GTAAGTCTAGGAGACACCAATCAAGTGCTATGAAAAGTTCTGATTCAGAAACTTCAAGGAGAAGGAGGGACTCACTTGATCAGAGCTGGGCTAGTTTTGA GCCTACGAAAACAACTGTAAAAAGGGTGCTTTTGCAAGAAAATCAGAAGAAAAATGTGAATAAATCATTCTTGTTGAAGGATAGGCAAATTTTTAGTTCT GGCTTGGGGGACATATCCACAGTTCACCAAGAAGACCAGACATCCCGTTCTTTCTTGCACCCATTGGAAAGCAAAGGCCTTCATTATGGATCCCCTAAAC AAACGTTTGAGAAAAAACCAACCGTTCCATTTAAATGGGCTACTGATCCTCCAATGTCATCACAGCCTCTGGGCTTGCGTTCTCCTATACTGCAAAATAA CAATGTAGCGATGGTATCAGTTTCGTCATCACTGGTATCACTGCCAGGAGGAGAAATACGTAGCAGGGAAGCCTACAATATGACTGCAGATAAATCTAAG AGTATGTTTTCTCAAATTGAGAAGCCTGATTCTGTTTCCACCAATGAGACCAGACATATTCAGCAAACTGAAACTAGGATAAATAAAAATTCAGCAGACT CTACCGTGCCACCAATGCAGACACCTTCGTTTCCAAAGAAACCAAATGAGATTCCTGTTTCAACTACCAGTAGCGTGCTTGCAAAGTCAGCAATGCAAAG TGTGAGGCCTGGACCAGCAGACACCAAAAGTTCATTTTTTGAATCTCCCAATAAAAATTATGAGCCTCCGCACTCTTTGTTAGGTGCCTCTTCTGTGGCT CCCACCCAACCTGGAAAAGTTCCTGAGATCAATTTTGCTACTAGCAAAAGCCAGCCTAGTGAAAAAGTTTCATCTTCTCCATCAGCCTTCATACCGCATG CAGTTTCATCATCTCTGATGTCCAATATATCACCAAACATCTCATCATCAATATCTGCACGGATGTCGTCAGCTGCAATGTCACCGAGCACATCTTTAAC CAGTTCTAAGGTCACCACCGGCTCTAATCAAACAGTTACTTCGACATCATTGTCATCAGTTTCTGTCTCACCTGTTTTTTCTTCCGGTTCATTGTCTTTT CAGGTCCCCAGGACAGAGCTACCATCACATGCTCCACCTCTAACTTCAGAGGTTTCTCCAGAGCTGCAACCCCCTCTAGGGAAAACTCTGCCTTCTAGCA ATCCAGGTCCTTCATGTTTGACATCAGAATCCCTTGAAACAGATATTCAGCCTCTTATGGAAAAACCTGCACGTAATGTAAACCCCACTCCTACACCTTC AGTGTCAGAATCACTTAAAACAGAGCCCCAACCTCCTGCTGGAAAAAATCCACCTTCTGTCACTCCAACGACCCCTACCCCTTCAGCATCAGAGTCCCCC AAAACAGAGGTTCCACATCCTACGGGTGAAGTAAGTTCAAAATCAGATGTGGATGTTCCTGCAACTGCTCCACACCCTAACCCTACTACATTTGGTTTGA AGCTTGAACCTTCAGCATCATCTGTCCTTACTACAGGACTATCAACTGGATTTGCACCAGTAACCCAGCCCAGCTTGAATCACTCTGGAAGTACTGCATC TAAGGTGGCTCTGAATTCTCAACCTCAACAGCCATCTTCTCATAATGTTCCTTTTGGAGCACCAATCCCGACTTCTGATAGCGTTAGTGGAAAGAATGAA AGTTTGGATGTTGCAGTTACAGAAGAGGTTGAAATGGAGGAGGAGGCTCCTGAGGCTAGCTGCACAAATGAACTTAATTTGGGAAATCTTGGAGGTTTTG GGATTGGTTCAACCCCTATCCCAACTGCTCCTAGAGCAAATCCATTTGGCAGTCCATTTGGTAGCACGGGATCAAATGTAGCAAGCTCTTCGTTGACCAT GACTGTACCTAGTGGAGAGCTCTTTCGACCTGCCTCTTTCAACTTTCAATCTCCTCAGCCATCCCAAAAGCCTCCACCAACAAATATGGGTGCTTTCTCT GGTGGCTTTGGCACAGGAGCAGTTGCTCAAGCTCCTGCTCAAAGTCAGTTTGGCCAGCCAGCACATATTGGATCAGGACAGCAAGCACTGGGATCAGTTC TTGGGACTTTTGGGCAGTCGAGACAGTTTGGAACTGGTTTACCTGGAAGTGGTTTCGCTCCTACCAGTGGTTTTGGTGGTGGCCTTGCTGCTAGTAGTTC AACAGGTGGCTTTGCAAGTGCTGCAACTGCTGGCGGGTTTGCTGGTGCTGCTTCTACTGGTGGTGGATTTGCTGCTTTGGCCTCATCTGGTGCAGGATTT GCTGGTGTGGCTGCTGGGGGTGGGTTTGGTAGTGTAGCTTCTGGTGTTGGGTTTGGTGGAGTGGCTTCTGGTGGCAGTGGCATTGCTGGTGTGGCTTCAG GTGGAGGTGGATTTGCCGCAGCAGCCTCGAGTGCTGGTGGTTTCGCAGCAGCGCCTGCATCTGGTAGTGGATTTGGTACATCAGGTAGTGGATTTGGGGC TTTTGGCAGCCAACAAGGTACTGGAGGATTCTCAGGTTTTCCTGGTAATGCAGGAGGCAGCCAACAAGGAATTGGTGGATTCTCTGCTTTCAGTGGTAAT CCAGCAGGAACTGGAAAACCTGCGGAATTATTTACACAGATGAGAAAATAG
AA sequence Show only first row Show all	>Potri.003G223400.9 pacid=42784741 polypeptide=Potri.003G223400.9.p locus=Potri.003G223400 ID=Potri.003G223400.9.v4.1 annot-version=v4.1 MGFGKEGETKTEFEEEKEGDHVESSDYYFDKIGKPIPILSDQTVSPFPLQNPPLPSRPLALSQSRSLIFLAHPSGFLVARTKDVMDAAMDIKEKGSSSSS SIQHVSLVDVPIGKVHILTLSTDSSTLAVSVAAHIHFFHVHSLLDKEQKPSFSCSLSEPSSSTVKDIQWRRRPDNSYLVLSNQGKLYHGALAAVTHTLKH ITDNVDAVEWSLKGKYIAVARGSLISILSSNFKERFSISLPFRSWIADSDDNCTVKVDSIRWVRHDSIIVGCFQQTADGKEENYFLQVISRKDGKIYDSS SKPVVLSFYDLFSGLVDDIVPYGSGPYLSLDYLEQCGLAITANKKNTDQHIVLLGWSVEDEMSETAVIDIERDTWLPRIELQENGDDNLIMGLCVDRVSL YGKVKVEVGVEEQKELSPYCVLMCVTLEGKLVMFQVASATGANIQPEVDSSLEDEEEDIALEPEGCDQSNLSSGLHEETLEEISLGLQPQHASNKELQLN KDGGIPTQKDLVPSVKNEIPEKLEIKSLSVQQSAKLGQSSLKASFPEIPREVGSNALPGVPSQSWASGKVTLSASTLIQGNRPDYNNVQVGAANVPSDLG SKSFCMKDTAGQSTSFNASVRPALDGEQRGSIVSGTIESLPAFRSSQLSSHENFASARSPNHRLKYSKDNYKTSSLRSSEPNLSKQFGNIKELAKELDTL LECIEEKGGFRDACTVFLRGSVEALEEGMGTLSENCRMWKSVMDERLGEIHHLLDKTVQVLARKIYVDGIVKQASDSQYLELWNRQKLSSELELKRRCIL KLNQELTNQLIQLERHFNTLELQSFGGNAGFHTDRRTLQIRYMPSRQLQSLHSLQNTMSSQLAAAEQLSECLSKQMSMLSIESPVRQKNVKKELFETIGI PYDASFSSPDATKVGDTTSLKKLLLSSGSAATKGKSRRHQSSAMKSSDSETSRRRRDSLDQSWASFEPTKTTVKRVLLQENQKKNVNKSFLLKDRQIFSS GLGDISTVHQEDQTSRSFLHPLESKGLHYGSPKQTFEKKPTVPFKWATDPPMSSQPLGLRSPILQNNNVAMVSVSSSLVSLPGGEIRSREAYNMTADKSK SMFSQIEKPDSVSTNETRHIQQTETRINKNSADSTVPPMQTPSFPKKPNEIPVSTTSSVLAKSAMQSVRPGPADTKSSFFESPNKNYEPPHSLLGASSVA PTQPGKVPEINFATSKSQPSEKVSSSPSAFIPHAVSSSLMSNISPNISSSISARMSSAAMSPSTSLTSSKVTTGSNQTVTSTSLSSVSVSPVFSSGSLSF QVPRTELPSHAPPLTSEVSPELQPPLGKTLPSSNPGPSCLTSESLETDIQPLMEKPARNVNPTPTPSVSESLKTEPQPPAGKNPPSVTPTTPTPSASESP KTEVPHPTGEVSSKSDVDVPATAPHPNPTTFGLKLEPSASSVLTTGLSTGFAPVTQPSLNHSGSTASKVALNSQPQQPSSHNVPFGAPIPTSDSVSGKNE SLDVAVTEEVEMEEEAPEASCTNELNLGNLGGFGIGSTPIPTAPRANPFGSPFGSTGSNVASSSLTMTVPSGELFRPASFNFQSPQPSQKPPPTNMGAFS GGFGTGAVAQAPAQSQFGQPAHIGSGQQALGSVLGTFGQSRQFGTGLPGSGFAPTSGFGGGLAASSSTGGFASAATAGGFAGAASTGGGFAALASSGAGF AGVAAGGGFGSVASGVGFGGVASGGSGIAGVASGGGGFAAAASSAGGFAAAPASGSGFGTSGSGFGAFGSQQGTGGFSGFPGNAGGSQQGIGGFSAFSGN PAGTGKPAELFTQMRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.008G003600 [exp]	1.00	0.9415
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Potri.015G142900 [exp]	1.41	0.9101
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	3.31	0.8963
AT1G72390			unknown protein		Potri.001G165800 [exp]	4.24	0.9060
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.008G114900 [exp]	5.29	0.8891
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.007G070700 [exp]	5.47	0.9000
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.009G144800 [exp]	5.47	0.8969
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.006G075500 [exp]	6.00	0.8865
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	6.92	0.9037	Pt-RPB1.1
AT1G21610			wound-responsive family protei...		Potri.005G182300 [exp]	7.21	0.8896

Compare expression of checked genes

Potri.003G223400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.