Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56320 192 / 4e-63 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G40610 192 / 6e-63 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT1G26770 191 / 2e-62 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT2G03090 188 / 2e-61 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G69530 187 / 4e-61 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT3G29030 184 / 7e-60 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT5G05290 175 / 4e-56 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT5G02260 172 / 8e-55 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT3G55500 172 / 8e-55 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G39700 169 / 7e-54 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001100 [exp] 225 / 5e-76 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.013G060800 [exp] 201 / 1e-66 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.017G085300 [exp] 190 / 2e-62 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.004G123200 [exp] 190 / 3e-62 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 189 / 1e-61 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.008G088300 [exp] 188 / 2e-61 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.019G057500 [exp] 184 / 8e-60 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.013G154700 [exp] 184 / 1e-59 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.006G108000 [exp] 181 / 1e-58 AT2G40610 379 / 2e-134 expansin A8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026614 [exp] 198 / 3e-65 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10034465 [exp] 196 / 7e-64 AT2G03090 273 / 5e-92 EXPANSIN 15, expansin A15 (.1) Lus10036763 [exp] 191 / 2e-62 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 190 / 8e-62 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10033011 [exp] 185 / 7e-60 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) Lus10008603 [exp] 181 / 2e-58 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10034227 [exp] 181 / 3e-58 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10042214 [exp] 176 / 1e-56 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10009917 [exp] 175 / 4e-56 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10024388 [exp] 168 / 2e-53 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G223501.1 pacid=42784519 polypeptide=Potri.003G223501.1.p locus=Potri.003G223501 ID=Potri.003G223501.1.v4.1 annot-version=v4.1 CCTTTCTCAACCTGTTTCCAAAAGATTGCCCAGTACAAAGCTGGAATAGTGCCTGTCCAGTATAGAAGGGTTGCTTGCAGAAAGAGTGGTGGTATCAGAT TCACGATTAATGGGCACTCCTACTTTAATCTGGTGGTGATAACCAATGTGGGCGGAGCTGGTGATGTAGTCGCGGTTTCCATAAAAGGGTCCAAAAGCAA TTGGCAGGCAATGTCCAGGAACTGGGGCCAGAACTGGCAGAGTAACACCTACTTGAATAATCAAGCCCTCTCTTTCAAGGTCACAACCAGTGATGGACAC ACTATGGTCTCCAACAATGTGGCTCCATCCAACTGGGCCTTTGGCAGAACCTACACAGGGGGCAGTTCTAAC
AA sequence Show only first row Show all	>Potri.003G223501.1 pacid=42784519 polypeptide=Potri.003G223501.1.p locus=Potri.003G223501 ID=Potri.003G223501.1.v4.1 annot-version=v4.1 PFSTCFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVVITNVGGAGDVVAVSIKGSKSNWQAMSRNWGQNWQSNTYLNNQALSFKVTTSDGH TMVSNNVAPSNWAFGRTYTGGSSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56320		ATHEXPALPHA1.5,...	EXPANSIN 14, expansin A14 (.1)		Potri.003G223501 [exp]	0	1
					Potri.004G063101 [exp]	2.44	1.0000
					Potri.010G212850 [exp]	4.00	0.9891
AT5G41761			unknown protein		Potri.001G364550 [exp]	5.47	0.9613
					Potri.014G018801 [exp]	5.65	0.9266
AT2G32235			unknown protein		Potri.004G028100 [exp]	6.48	0.9432
					Potri.008G224246 [exp]	6.92	0.9669
					Potri.008G224228 [exp]	7.00	0.9650
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.010G212800 [exp]	7.74	0.9479
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Potri.001G113800 [exp]	10.24	0.9131
					Potri.005G026425 [exp]	11.00	0.9608

Compare expression of checked genes

Potri.003G223501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.