Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55550 647 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27950 354 / 2e-110 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27550 289 / 1e-84 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22610 288 / 3e-82 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G72250 278 / 4e-78 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G27000 256 / 2e-71 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT4G27180 247 / 6e-70 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT5G54670 241 / 1e-67 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT2G47500 242 / 1e-66 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT4G05190 237 / 5e-66 ATK5 kinesin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G000800 [exp] 1522 / 0 AT1G55550 627 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G033900 [exp] 372 / 3e-117 AT5G27950 676 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G020700 [exp] 285 / 3e-83 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G030271 [exp] 278 / 9e-81 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G110600 [exp] 280 / 9e-80 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.011G140000 [exp] 277 / 5e-78 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.001G436200 [exp] 266 / 4e-74 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.013G011500 [exp] 255 / 4e-71 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 253 / 2e-70 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033849 [exp] 358 / 4e-112 AT5G27950 662 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018999 [exp] 331 / 7e-102 AT5G27950 617 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035954 [exp] 288 / 2e-82 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10025708 [exp] 278 / 1e-78 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10004487 [exp] 266 / 4e-76 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013714 [exp] 270 / 1e-75 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10005582 [exp] 269 / 1e-75 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10029914 [exp] 264 / 2e-75 AT5G27550 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032897 [exp] 253 / 1e-69 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10009851 [exp] 244 / 2e-67 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.003G223800.5 pacid=42785817 polypeptide=Potri.003G223800.5.p locus=Potri.003G223800 ID=Potri.003G223800.5.v4.1 annot-version=v4.1 ATGGATTCAAGAAAATCTGTCAGAAATCTTGCTGAATCCCTTCATTCCCTACTAGGGATAAAGGCAAATCTAACTTCCAACTGGATTAAATCAGTTTGTG ATATAATAAAAACCCTTCCATCTGAAAAATCAGTTGACATGCAGCCAACCAACTCTGATATTAATGATGATGATAATGAAGACGACGACGACTGCAGTGC AATTTCAAAAATAAAAGATGAACTAACTGTCTTGACTAACCACATAAACCAACTGAACATAAAGAGGAGGCAAATCCTAAACGAGTTCCTGGACTTGAAA GGGAACATCCGTGTATTTTGTAGAATAAGACCTATCACATCTGGGGAGAATTGTGGTCATTTAAGACCAGTCGTCGCATCGGATTCAAATAAAGTTGTTC TAAAGCTTATGAACAGTAAGAGCAAGAGTTACAATTTTGACAAGGTTCTCCACCCAGGTTCATCCCAAGATGAAGTTTTTACAGAAGTTGAACCCATCAT CAAATCAGTCCTTGATGGTTACAACGCCTGCATTTTTGCATATGGGCAAACGGGCACAGGAAAAACTTTCACAATGGAAGGTGATGAAGACACTCCAGGC ATAGTGCCACGGGCCATGGAGGCTCTATTTAAACAAGCAGTAGACAGTAACCGTGCATTTCTCATCAGTTTCAGTATGCTCGAGATATACATGGGAAATC TTAAGGACTTGCTTGTCCCCAAACCAACAAAAGCAACATATCCTATGCCACCTTGCCTTTCAATACAAACAGATCCAACGGGAGGAGTCGAAATCGACAA CCTTGTGGCCATTAAAGTGAACGACTTCAACCAAGCTCTGAGGCTGTACAGATTGGGCTGCCGTTTCAGATCAACTGCCTCAACAAATTCCAACCTGACA TCTAGCCGATCTCACTGCATGATACGGGTAGCAATAACTTGCTTCAATGCTCCTGAAAGGCGAAGGGAAACAAATAAAATATGGTTAGTTGATCTCGGGG GAAGCGAGCGTGTACTGAAGACAAAGGCATGGGGCAAAAGACTCAATGAAGGAAAAGCCATTAATTTGTCACTCTCTGCCCTTGGGGACGTGATTAGTGC CCTCCAAAGGAAAAGGCATCACATACCTTACAGGAATAGCAAGCTGACACAAGTTCTCAAAGATTCTCTAGGTAATGATTCAAAAACAATAATGCTGGTC CATGTCAGTCCCAAAGAAGAAGATTTGTGTGAGACCATATGTTCTTTAAATTTTGCAACAAGGGTGAAAGGTGTTCACCTAGGAAACGACGAAACAATTG AAGCAAAAGAGAAGAAGGAAGTTGCAATGGCAAACCTGCAGCAAAAGATGAAACATATTGAAGATGAGTGGCTGCTTGCTAGAAGTGACATTGAAATATT AAACAAGAAATTAGAAAATCTAACAGGGACAAGTACATCATCTGAGGAGCAAATGGAGGCATACCATTCTTCTATAGAAGAACCACTTACAAAGAGCAGG ATAGCAGATATTACAGCGAGTCCTTTATCAAAGTTACCAAGATTTATGAGGCCTACCATTTGCAGCCGAAGAAAATCTGGGACGAGGTATCAAACTTCTG AAGGAAGAGATGGCACAGTCCTTGCAAGAAGGAGAAGACCAACATTTCATCGAGCAGAGTCTGTGAGTTTCCCTGTAAAGCATCATTCAGAAAACAATTC AGACCACAGTTTTTCCAGATCTAGCTGTTTGGCAGGGTTGAACATGAAAGATAGTACTGATGATGCAACAGAATACAGCCAAGACACAACTGAAACTGGT TTTAAATTTAATGGTCTCCAAGAACAAGAAAGAGCACCAAGGAATTTGATTAGTCAAAAGCCAGGCATCAGTCACATTCAGAAAAATAGCAGTAGACAGA TGAACAAAATCAACCGTGTCAAATTTTCTAAGATTGATAGCTGGCTACATCTACAGAAGAGTGAATCCACTCTAAGTGGTTGCACTCAAAGGAAAAAACG GGTTTTAGCTGTTCCTATTCCTGAGAAGAAACATAAGAGTACAGTAGAGAGCAAAGCAGACAATTTTTTTGACGAGAATGTGCATGACTATGCATATGCA AAGCAAGTTGTCAACCATGATGAAATAAATGATCTCGCAACCACAGGGGCAGTTGGAAAGCCCATATCAGAAGCGGTCATGGAAAACCCACTGAAAATGT TAAAAGATTTATTTAATGAGGACTCAAGATCAGATGTCACTTCTCCATTACAGACAACCGGGGGGGAAACAATGGTACAAAAACTACAGCTTTCTGTGGG CGATATATTAGCAGGGGATAATGAATACGACACTTTTTCTCCACAAGATGGGTGTTTTCCTAGTCTTGAAGAATGTGAGGATGGCAACAGGGTCAATGAT ATGTCAACTACAAAGGCACCAGAAGGCAAAATACTCCTGCTAAAGATCAGTGGGCGCAGTGAATGTTGTCCATCTGAATTATATACTACTTCCGTTTGTT CAAAAAGGGATTCTGGTGTCTCCTTTGCCGTGTTAGAACTGGAATCATGCTGTCAGCAAGCACCCACTGAATCAAATATGGAAGACAGTGAAAGGCAAGG CTTTTACTCCTTTCAGTCGTTGGCAAAAGAGACAAGACATGGCCTACTTCAGTTGAACTCAGCATTATTTATGAACAGTGAAAATCATGAGAACTTAGTT GTGACATTTGGTAAACCAGAAGGAAAATTACAGAACACAGGAATATGCCATGTTGTTAAACAGAAAATTGAGATTTTATGCTCCAGTGCTCTTCTAGGAT TGGGGCTTTATGACCTGGGACTCGACCACGATTTCTTCTACGGTTTAATGCTTTGA
AA sequence Show only first row Show all	>Potri.003G223800.5 pacid=42785817 polypeptide=Potri.003G223800.5.p locus=Potri.003G223800 ID=Potri.003G223800.5.v4.1 annot-version=v4.1 MDSRKSVRNLAESLHSLLGIKANLTSNWIKSVCDIIKTLPSEKSVDMQPTNSDINDDDNEDDDDCSAISKIKDELTVLTNHINQLNIKRRQILNEFLDLK GNIRVFCRIRPITSGENCGHLRPVVASDSNKVVLKLMNSKSKSYNFDKVLHPGSSQDEVFTEVEPIIKSVLDGYNACIFAYGQTGTGKTFTMEGDEDTPG IVPRAMEALFKQAVDSNRAFLISFSMLEIYMGNLKDLLVPKPTKATYPMPPCLSIQTDPTGGVEIDNLVAIKVNDFNQALRLYRLGCRFRSTASTNSNLT SSRSHCMIRVAITCFNAPERRRETNKIWLVDLGGSERVLKTKAWGKRLNEGKAINLSLSALGDVISALQRKRHHIPYRNSKLTQVLKDSLGNDSKTIMLV HVSPKEEDLCETICSLNFATRVKGVHLGNDETIEAKEKKEVAMANLQQKMKHIEDEWLLARSDIEILNKKLENLTGTSTSSEEQMEAYHSSIEEPLTKSR IADITASPLSKLPRFMRPTICSRRKSGTRYQTSEGRDGTVLARRRRPTFHRAESVSFPVKHHSENNSDHSFSRSSCLAGLNMKDSTDDATEYSQDTTETG FKFNGLQEQERAPRNLISQKPGISHIQKNSSRQMNKINRVKFSKIDSWLHLQKSESTLSGCTQRKKRVLAVPIPEKKHKSTVESKADNFFDENVHDYAYA KQVVNHDEINDLATTGAVGKPISEAVMENPLKMLKDLFNEDSRSDVTSPLQTTGGETMVQKLQLSVGDILAGDNEYDTFSPQDGCFPSLEECEDGNRVND MSTTKAPEGKILLLKISGRSECCPSELYTTSVCSKRDSGVSFAVLELESCCQQAPTESNMEDSERQGFYSFQSLAKETRHGLLQLNSALFMNSENHENLV VTFGKPEGKLQNTGICHVVKQKIEILCSSALLGLGLYDLGLDHDFFYGLML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55550			P-loop containing nucleoside t...		Potri.003G223800 [exp]	0	1
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.016G113600 [exp]	1.00	0.8864	AUX1.1
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Potri.002G036200 [exp]	2.44	0.8329
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.005G255400 [exp]	3.74	0.8049
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.003G113000 [exp]	4.24	0.8552
AT5G43020			Leucine-rich repeat protein ki...		Potri.007G046900 [exp]	4.58	0.8320
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Potri.010G092300 [exp]	6.24	0.8073
AT1G23460			Pectin lyase-like superfamily ...		Potri.001G463000 [exp]	7.21	0.8364
AT3G57620			glyoxal oxidase-related protei...		Potri.013G034900 [exp]	8.00	0.8267
AT3G43120			SAUR-like auxin-responsive pro...		Potri.018G132400 [exp]	8.00	0.8035
AT5G12300			Calcium-dependent lipid-bindin...		Potri.001G275800 [exp]	8.94	0.7928

Compare expression of checked genes

Potri.003G223800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.