Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 384 / 9e-128 MEF21 mitochondrial editing factor 21 (.1) AT5G66520 365 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 361 / 2e-117 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 358 / 3e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 357 / 2e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 356 / 3e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G59200 350 / 2e-114 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 347 / 3e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 347 / 6e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065500 [exp] 384 / 7e-127 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G035900 [exp] 381 / 2e-126 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.003G031600 [exp] 380 / 1e-123 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G237000 [exp] 367 / 3e-120 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 365 / 4e-119 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G012600 [exp] 364 / 2e-118 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 362 / 3e-118 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 362 / 3e-118 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G239600 [exp] 357 / 7e-116 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029344 [exp] 394 / 1e-130 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026006 [exp] 369 / 2e-120 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030125 [exp] 359 / 1e-118 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10014298 [exp] 363 / 2e-118 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 362 / 5e-117 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 354 / 2e-114 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015718 [exp] 348 / 2e-113 AT5G66520 357 / 6e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 350 / 6e-113 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 350 / 1e-112 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023592 [exp] 349 / 1e-112 AT1G74630 840 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.003G223900.1 pacid=42784931 polypeptide=Potri.003G223900.1.p locus=Potri.003G223900 ID=Potri.003G223900.1.v4.1 annot-version=v4.1 ATGCTCCTCCTCTACTGCAGCTCCCTTGTTTCATCATCATCAATTTTGATTTCCTTGATTGCCCATTCCTCTCATCTCAAGCACATCCACCAGACACATG CCTTCATGCTTCTCAGAGCTCTCGATACAGACAACCTGCTCCTCAGTCGATTCATTCACGCATGCTCTTCTCTTGGCTTCTATTCCTATGCTTACTCTCT CTTCACCTCCATCACCCATGCCCCCGACATCTATCTCTACAACAACATCATCAAAGCTCTCTCTTCCTCTCCCACCCACCCCAAAGCTTCAATCTTTCTT TACAATAACATCCAACTTGCTGGCTTGCGACCTGATTCCTACTCTTTCCCTTTCGCTCTCAAGGCCGTCACTCGATTTTCATCGATCCAGACTGGGAGGC AACTTCACTCTCAATCCATTCGCTTTGGCCTCCACTCTGACCTTCACGTCCTTACGGCCTTTGTCCAGATGTACTCCTCCTTCGGCTCTGGTTGCATTTG TGATGCGCGCAAGATGTTTGATGGAATGAGCATGTCGACAGGAGATGTCGCTCTTTGGAACGCAATGCTTAATGGGTATGCTAAGCATGGTGACCTCTGT AATGCTCGAGATTTATTTGAACGTATGCCTCAAAGAAACGTTATCTCCTGGACAGCTCTCATTACTGGGTATGCACAGGCGAATCGGCCCCACGATGCCA TTGCTTTGTTTCGTAGAATGCAGCTCGAAAATGTGGAGCCTGATGAAATTGCCATGTTAGTTGCGCTTACTGCTTGTGCCCGACTGGGTGCGTTGGAGCT GGGGGAGTGGATTCGTCACTACATTGACAGACTTGGATTATTGACTACAAATATCCCTCTCAACAATGCACTTATAGACATGTATGCGAAGTCTGGCGAC ATTAAAAGTGCATTACAAGTATTCGAGAATATGAATCATAAAACTATCATAACATGGACAACAATGATTGCTGGACTAGCTTTGCACGGACTTGGAACAG AAGCCCTTGAAATGTTCTCTCGAATGGAAAGGGCAAGAGTTAAGCCAAATGACATCACTTTCATTGCCATCCTTTCCGCTTGTAGCCATGTGGGATTGGT ACAAACCGGTAGATGGTATTTTAACCGTATGATATCTAGGTATGGGATTGAACCCAAGATTGAGCATTATGGCTGCATGATTGATTTACTTGGGCGCGCT GGTCACCTCAAAGAGGCACAAACACTACTTGCTCAGATGCCATTCGAGCCTAACGCGGTTATATGGGGGTCTCTTCTTGCTGCTTGTAATACTCATGGTG ACCCTGAGCTTGGAGAGCTTGCATTGCAGCATCTATTAGAGTTGGAGCCTGATAACAGCGGAAACTATGCACTTTTATCGAATATTTATGCTTCTCGTGG TAGATGGAATGAGTCTCGGGTGGTGAGAAAGGTGATGTGGGATGCAGGAGTTAAAAAAATGCCAGGAGGAAGTCTTATTGAAGTGAATAACAGAGTTCAT GAGTTTATTGCAGGAGAGATTTCGCATTCTCAGTTTGATAGGATACAGGAAGTTCTAAGCAAGATAAATCGGCAATTAGGACTTTCTCAGCATTTCGAGA AGGAAAGTGGTGCGCTGCTTGAATTGGGATAG
AA sequence Show only first row Show all	>Potri.003G223900.1 pacid=42784931 polypeptide=Potri.003G223900.1.p locus=Potri.003G223900 ID=Potri.003G223900.1.v4.1 annot-version=v4.1 MLLLYCSSLVSSSSILISLIAHSSHLKHIHQTHAFMLLRALDTDNLLLSRFIHACSSLGFYSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHPKASIFL YNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLC NARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGD IKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRA GHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYASRGRWNESRVVRKVMWDAGVKKMPGGSLIEVNNRVH EFIAGEISHSQFDRIQEVLSKINRQLGLSQHFEKESGALLELG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	0	1
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.005G129800 [exp]	2.44	0.8862
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.016G128900 [exp]	2.64	0.8429
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.002G024100 [exp]	4.89	0.8458	XRN2.1
AT1G78810			unknown protein		Potri.011G109600 [exp]	5.47	0.8283
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	7.14	0.8560
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Potri.004G134300 [exp]	8.24	0.8508
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072566 [exp]	8.48	0.8219
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	8.94	0.8507
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Potri.013G006700 [exp]	11.61	0.8107
AT3G16610			pentatricopeptide (PPR) repeat...		Potri.003G006800 [exp]	12.00	0.8383

Compare expression of checked genes

Potri.003G223900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.