Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32080 459 / 2e-164 PUR ALPHA-1, PURALPHA-1 purin-rich alpha 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G000700 [exp] 532 / 0 AT2G32080 447 / 5e-160 purin-rich alpha 1 (.1.2) Potri.013G061100 [exp] 179 / 3e-54 AT2G32080 162 / 9e-48 purin-rich alpha 1 (.1.2) Potri.019G032001 [exp] 46 / 3e-06 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009182 [exp] 483 / 7e-174 AT2G32080 442 / 9e-158 purin-rich alpha 1 (.1.2) Lus10001782 [exp] 477 / 2e-171 AT2G32080 425 / 4e-151 purin-rich alpha 1 (.1.2) Lus10001781 [exp] 424 / 1e-150 AT2G32080 374 / 3e-131 purin-rich alpha 1 (.1.2) Lus10020245 [exp] 369 / 5e-130 AT2G32080 327 / 6e-114 purin-rich alpha 1 (.1.2) Lus10015921 [exp] 318 / 2e-109 AT2G32080 363 / 5e-127 purin-rich alpha 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0609 [poplar] [flax] sPC4_like PF04845 [poplar] [flax] PurA PurA ssDNA and RNA-binding protein
Representative CDS sequence Show only first row Show all	>Potri.003G224000.1 pacid=42784952 polypeptide=Potri.003G224000.1.p locus=Potri.003G224000 ID=Potri.003G224000.1.v4.1 annot-version=v4.1 ATGGAGGGGAATTCTGGCGGAGTTGGTGGTGGAGGAAGTGGCAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGAGGAGGGAATGATGTAGAGCTCA TGTGCAAGACTCTACAAGTGGAACACAAGCTTTTCTATTTCGATCTAAAAGAGAATCCACGGGGTCGTTACTTGAAGATATCAGAGAAGACTTCAGCCAC CAGGTCCACCATCATCGTTCCCTTCTCCGGGATTTCTTGGTTCTTGGATCTCTTCAATTACTATGTTAATAATTCTGCTGATGATCAGGACCTCTTCAGC AAGGAATTGCAGCTCGACACCAAGGTTTTCTACTTTGACATTGGCGAAAACAGAAGGGGCCGGTTCTTGAAGGTGTCTGAAGCTTCTGTCAGTAGAAACC GAAGTACTATTATTGTTCCTGCTGGAAGTTCACGGGATGAAGGGTGGGCAGCGTTTAGAAATATTTTGGCTGAGATCAATGAAGCATCAAGACTTTTTAT GCTGCCCAATCAGCAAAGTTCTGAAACTTCTGAGCGCCTCGTTGGACTTTCTGATGATGTAGGGGCTGGCTTCATATCTGGGCACAGTAGCCAATCTGTG ACGACTTCTGAACTGAATGTTGACAGGTCAGTTGAACTGCCCCCACAGGATGAAATTGGTAACATGGCGGTGTCAAAGGTAATCAGAGTTGATCAGAAAA GATTCTTCTTCGATCTTGGTAGCAACAACAGAGGTCATTTTCTGAGGATTTCAGAGGTTGCAGGTAATGATAGGTCCTCAATAATTCTCCCACTTTCTGG GCTGAAGCAGTTTCATGAGATTGTGGGTCATTTTGTGGAGATAACCAAAGATCGAATTGAAGGAATGACAGGAGCAAATGTTCGGACTGTAGACCCTCCT CAAAGATGA
AA sequence Show only first row Show all	>Potri.003G224000.1 pacid=42784952 polypeptide=Potri.003G224000.1.p locus=Potri.003G224000 ID=Potri.003G224000.1.v4.1 annot-version=v4.1 MEGNSGGVGGGGSGSGGGGGGGGGGGGGNDVELMCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYVNNSADDQDLFS KELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLFMLPNQQSSETSERLVGLSDDVGAGFISGHSSQSV TTSELNVDRSVELPPQDEIGNMAVSKVIRVDQKRFFFDLGSNNRGHFLRISEVAGNDRSSIILPLSGLKQFHEIVGHFVEITKDRIEGMTGANVRTVDPP QR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Potri.003G224000 [exp]	0	1
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.009G113045 [exp]	2.82	0.8424
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.005G077500 [exp]	3.87	0.8327
AT1G30540			Actin-like ATPase superfamily ...		Potri.011G164500 [exp]	5.09	0.7582
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Potri.005G185600 [exp]	5.65	0.8018	Pt-ACR3.2
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Potri.018G132000 [exp]	8.36	0.7704
AT2G20830			transferases;folic acid bindin...		Potri.013G145600 [exp]	10.19	0.7678
					Potri.013G005300 [exp]	11.18	0.7522
AT4G09760			Protein kinase superfamily pro...		Potri.002G063700 [exp]	15.29	0.7570
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.008G136500 [exp]	16.43	0.7852
AT1G48320			Thioesterase superfamily prote...		Potri.010G003800 [exp]	24.37	0.7010

Compare expression of checked genes

Potri.003G224000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.