Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16340 758 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 754 / 0 AAE5 acyl activating enzyme 5 (.1) AT1G75960 711 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G21540 709 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G21530 696 / 0 AMP-dependent synthetase and ligase family protein (.1.2) AT1G77240 686 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 540 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT1G66120 536 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G65880 531 / 0 BZO1 benzoyloxyglucosinolate 1 (.1) AT2G17650 526 / 0 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G148500 [exp] 1019 / 0 AT5G16370 760 / 0.0 acyl activating enzyme 5 (.1) Potri.019G067800 [exp] 819 / 0 AT5G16370 799 / 0.0 acyl activating enzyme 5 (.1) Potri.019G068001 [exp] 782 / 0 AT5G16340 775 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.013G096200 [exp] 778 / 0 AT5G16340 779 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G068100 [exp] 775 / 0 AT5G16340 778 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G067900 [exp] 768 / 0 AT5G16340 777 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G082000 [exp] 563 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.016G034800 [exp] 560 / 0 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138350 [exp] 557 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039161 [exp] 803 / 0 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1) Lus10028375 [exp] 565 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10007369 [exp] 558 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10016011 [exp] 557 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10020787 [exp] 545 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10016870 [exp] 536 / 0 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037735 [exp] 535 / 0 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10010956 [exp] 532 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10016869 [exp] 531 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037734 [exp] 526 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G000300.1 pacid=42795642 polypeptide=Potri.004G000300.1.p locus=Potri.004G000300 ID=Potri.004G000300.1.v4.1 annot-version=v4.1 ATGGATGAGCTGAGACCAAGACCAGCAAACTCCTATGCTCTAACTCCCGTAGGCTTTTTGGACAGGGCAGCGATAGTGTATGGTGATTGCCCCTCCATCA TCTACAATAACATATCCTACACCTGGTCCCAGACCCACCGTCGATGTCTCCAACTGGCTTCATCTCTATCATCCATCGGTCTGAACAACGGCCATGTCGT CTCTATCTTAGCCCCCAATATCCCTGCCATGTACGAGCTCCATTTTGCAGTCCCTATGGCCGGCGCCATCCTCAACACCCTCAACACTCGCCTTGACGCG CGTACCATCTCCCTCCTCCTCTGTCACGCCGAATCCGAGCTCCTCTTTGTAGATCTTATGTCTGTCTCCTTAGTCAACGAAGCTATCTCCCTGCTTCCAT CCAGCGCCAAACCTCCACTCCTCGTCCTCATAGCCGATGATGATGAGGTCCTCCCCCAACAACCATCACCTACCATTCACTTCTACGATACCTACGAAGG GTTGTTGGAGAAGGGTGATCCTGCCTTCAACTGGACCCGTCCCAAGAATGACTTTGACCCTATTGTACTGAACTACACATCAGGCACGACCTCATCTCCT AAAGGCGTGGTGCACTGCCACAGGGGTCTCTTCATCGTGACCCTTGATTCGCTTGTTGATTGGTCATTCCCGAAACAGCCTGTCTTCTTGTGGACCCTGC CCATGTTTCATTCCAATGGATGGAGCTATCCCTGGGGCATGGCTGCCGTTGGTGGAACCAACATATGTCTCCGTAAATTCGATGCACCCACGATCTATGG TTTGATTAAAAAGCATGGGGTGACTCACATGTGTGGTGCACCTGTGGTTCTCAACATGCTATCAAACTCTCCCATCACTATGGAACCTTTAAAGAATCCA GTCCATATTATAACAGCCGGGGCTCCACCACCGGCCACCATACTCTCCCGCACGGAGTCCTTGGGGTTCGTAGTGGGGCATGGTTATGGGCTGACAGAAA CTGGTGGGATTGTTGTCTCGTGCGCCTGGAAAAGGCAGTGGAATCTTTTTCCCGCAACTGAGAGAGCGAGGCTGAAAGCAAGGCAAGGAGTGAGAACAGT TGGAATGACTGAGGTGGACGTGGTGGATCCTGTGACAGGAATGAGCGTGAAACGAGATGGATTAACACTTGGTGAGATTGTTCTAAGAGGTGGGTGCATC ATGCTGGGTTATCTCAAGGACCCAGTAGCTACAGCCAAGTGTATGACAGAGAATGGTTGGTTCTGCACTGGAGATGTAGGTGTGATGCATCCTGATGGTT ATTTAGAGATCAAAGATCGATCGAAGGATGTCATCATTAGCGGTGGAGAGAACTTGAGCAGCGTAGAGGTTGAGTCAGTGCTATACACATTTCCAGATAT TAACGAGGCGGCGGTTGTGGCACGACCCGATGAGTTTTGGGGCGAGACGCCCTGTGCGTTTGTGTCTTTGAAGGAGGCCTGTTGTAGGATCCCAACGGAG AAGGAAATCATTGAACATTGCAGGGGTAAGTTGCCACATTACATGGTGCCCAAAACAGTGGTTGTTAAGGAAAAACTGCCCAAGACATCAACTGGGAAGA TCCAAAAGGCTGTGCTTCGAGACATGGCCAAGGCAATGGGCTCGTCAAGAGCCAGTCGCATGTGA
AA sequence Show only first row Show all	>Potri.004G000300.1 pacid=42795642 polypeptide=Potri.004G000300.1.p locus=Potri.004G000300 ID=Potri.004G000300.1.v4.1 annot-version=v4.1 MDELRPRPANSYALTPVGFLDRAAIVYGDCPSIIYNNISYTWSQTHRRCLQLASSLSSIGLNNGHVVSILAPNIPAMYELHFAVPMAGAILNTLNTRLDA RTISLLLCHAESELLFVDLMSVSLVNEAISLLPSSAKPPLLVLIADDDEVLPQQPSPTIHFYDTYEGLLEKGDPAFNWTRPKNDFDPIVLNYTSGTTSSP KGVVHCHRGLFIVTLDSLVDWSFPKQPVFLWTLPMFHSNGWSYPWGMAAVGGTNICLRKFDAPTIYGLIKKHGVTHMCGAPVVLNMLSNSPITMEPLKNP VHIITAGAPPPATILSRTESLGFVVGHGYGLTETGGIVVSCAWKRQWNLFPATERARLKARQGVRTVGMTEVDVVDPVTGMSVKRDGLTLGEIVLRGGCI MLGYLKDPVATAKCMTENGWFCTGDVGVMHPDGYLEIKDRSKDVIISGGENLSSVEVESVLYTFPDINEAAVVARPDEFWGETPCAFVSLKEACCRIPTE KEIIEHCRGKLPHYMVPKTVVVKEKLPKTSTGKIQKAVLRDMAKAMGSSRASRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16340			AMP-dependent synthetase and l...		Potri.004G000300 [exp]	0	1
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Potri.009G005400 [exp]	3.74	0.9210
AT5G10610		CYP81K1	"cytochrome P450, family 81, s...		Potri.017G023850 [exp]	4.00	0.9198
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.001G167900 [exp]	6.70	0.8453
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.011G066800 [exp]	7.74	0.8771
AT5G10610		CYP81K1	"cytochrome P450, family 81, s...		Potri.017G028100 [exp]	8.77	0.8865
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028150 [exp]	8.94	0.8857
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.011G066900 [exp]	10.67	0.9130
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028200 [exp]	11.48	0.8770	CYP81R2v2,IFS1.55
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Potri.014G057700 [exp]	12.84	0.8745
AT5G62200			Embryo-specific protein 3, (AT...		Potri.015G132900 [exp]	13.96	0.8929

Compare expression of checked genes

Potri.004G000300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.