Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60870 535 / 0 RUG3 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) AT5G63860 142 / 2e-37 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 137 / 2e-36 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G16040 135 / 2e-35 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 136 / 3e-34 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 135 / 6e-34 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G76950 125 / 2e-30 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 122 / 2e-29 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 112 / 2e-26 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 112 / 4e-26 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100200 [exp] 140 / 5e-37 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 127 / 1e-32 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 127 / 1e-32 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G139600 [exp] 123 / 6e-30 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.001G276900 [exp] 123 / 7e-30 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.005G190000 [exp] 121 / 4e-29 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.009G071800 [exp] 120 / 6e-29 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.002G070300 [exp] 117 / 7e-28 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 115 / 3e-27 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042215 [exp] 578 / 0 AT5G60870 547 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Lus10008601 [exp] 330 / 3e-111 AT5G60870 321 / 5e-108 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Lus10008599 [exp] 252 / 1e-82 AT5G60870 231 / 2e-77 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Lus10039618 [exp] 140 / 5e-37 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 128 / 2e-32 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10033543 [exp] 124 / 2e-31 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10028600 [exp] 127 / 3e-31 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042800 [exp] 126 / 8e-31 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 125 / 1e-30 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10016335 [exp] 125 / 2e-30 AT5G19420 971 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.004G000600.1 pacid=42795981 polypeptide=Potri.004G000600.1.p locus=Potri.004G000600 ID=Potri.004G000600.1.v4.1 annot-version=v4.1 ATGACGAAGACGATGTTGCCTAGATGTCTTATTCGGCAACGCCTCACTCTCAACCGCCACTTCTCCTCCCTGTCCAACACAACCAAAGTGCCTGTCCTCT ACAAGAGCCCGCAAATCAACGAATCAAACCACAACGATACCATAACTCTCCAGCTCTTTTCATGGGGCAGAGGCGCCTCTGGTCAACTTGGTGGCGGCAT CGAAGAAATAAGGCTTTACCCAGCTCCAGTGGCCAACCTTCAGCTACCGCCTTCCTCCTTCACTCTTTCTCCAACCCCAGGCCAACTTGTTGACAATAAC AACAAAAAGGGAGTGACTGAGGTGGGCATTTCTTGTGGGCTGTTCCATTCTGCAATTCTTGCTGATGGTCATTTTTGGATGTGGGGAAAAGGAGATGGAG GCCGTCTTGGCTTTGGACACGAGAATCCTGCTTTTCTACCTACTTTGAACCCTTTTTTGGATTCCGTTCGCTCTATTGCTTTGGGCGGCGTTCATTCTGC TGCAATCACTTCCCTTGGCCACATTTTTACCTGGGGCTATGGCGGTTTCGGTGCATTGGGACACTCTGTTTATCATAGAGAACTCTTCCCTAGACTGGTG GAAGGCTCCTGGGATGGAAAGATACGCTGTATTTCCACTAGTGGCACACATACCGCTGCTGTCACTGAATCAGGGGAAGTTTATACTTGGGGTCGAGAGG AAGGGGATGGTCGATTGGGCCTCGGCCCTGGCCGGGGTCCAAATGAAGGGGGTGGACTTAGTATACCCTGCAAAGTAAAAACATTGCCCGTGCCTGTGGC TACTGTGTATTGTGGTGGATTTTTCACAATGGTGCTGACAGAGGAGGGGCAGATTTGGAACTGGGGAGCAAACTCAAACTATGAGCTTGGAAGAGGTGAT AAGGTCGGTGGTTGGAGACCGAAACCAATTCCTAGCCTTGAAGATGCTCGTATCATTCAGATAGCAGGTGGTGGATATCACTGTCTTGCCTTGACTGATG AAGGTAAAGTACTTTCGTGGGGGTTTGGTGGACATGGTCAGCTGGGCCATTCTTCAATTCAAAGTCAGAAAATACCGGCAGTGATTGATGCTTTGGCTGA TCAGTGTGTCATTTATATCGCCTGTGGAGGTTCATCTTCGGCAGCTATAACTGATAAAGGGAAGCTGTACATGTGGGGAAATGCCAAAGATTCTCAATTG GGAATACCTGGCTTGCCTGAGGTTCAATCATGCCCAGTCGAAGTCAAGTTTCTAATGGAGGATGATGGATTGGGACAGCACAGTGTGCTTTCGGTTTCAG TTGGCGCATCTCATGCAATGTGTTTGGTTTTGAGGTCAAGTTAA
AA sequence Show only first row Show all	>Potri.004G000600.1 pacid=42795981 polypeptide=Potri.004G000600.1.p locus=Potri.004G000600 ID=Potri.004G000600.1.v4.1 annot-version=v4.1 MTKTMLPRCLIRQRLTLNRHFSSLSNTTKVPVLYKSPQINESNHNDTITLQLFSWGRGASGQLGGGIEEIRLYPAPVANLQLPPSSFTLSPTPGQLVDNN NKKGVTEVGISCGLFHSAILADGHFWMWGKGDGGRLGFGHENPAFLPTLNPFLDSVRSIALGGVHSAAITSLGHIFTWGYGGFGALGHSVYHRELFPRLV EGSWDGKIRCISTSGTHTAAVTESGEVYTWGREEGDGRLGLGPGRGPNEGGGLSIPCKVKTLPVPVATVYCGGFFTMVLTEEGQIWNWGANSNYELGRGD KVGGWRPKPIPSLEDARIIQIAGGGYHCLALTDEGKVLSWGFGGHGQLGHSSIQSQKIPAVIDALADQCVIYIACGGSSSAAITDKGKLYMWGNAKDSQL GIPGLPEVQSCPVEVKFLMEDDGLGQHSVLSVSVGASHAMCLVLRSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Potri.004G000600 [exp]	0	1
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Potri.001G337200 [exp]	1.00	0.9187
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G177400 [exp]	4.89	0.8953
AT3G07310			Protein of unknown function (D...		Potri.002G247700 [exp]	6.70	0.8876
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Potri.010G160800 [exp]	7.93	0.8786
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G244900 [exp]	8.12	0.9098
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Potri.007G005300 [exp]	9.79	0.8862
AT1G14990			unknown protein		Potri.008G129900 [exp]	12.24	0.8849
AT1G71730			unknown protein		Potri.005G198100 [exp]	13.26	0.8865
AT2G40760			Rhodanese/Cell cycle control p...		Potri.019G059400 [exp]	13.56	0.8878
AT4G21520			Transducin/WD40 repeat-like su...		Potri.011G043000 [exp]	13.60	0.8669

Compare expression of checked genes

Potri.004G000600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.