Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 87 / 1e-18 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G07870 80 / 6e-16 F-box and associated interaction domains-containing protein (.1) AT2G27520 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) AT1G11620 76 / 6e-15 F-box and associated interaction domains-containing protein (.1) AT3G17480 67 / 8e-12 F-box and associated interaction domains-containing protein (.1) AT3G22730 67 / 9e-12 F-box and associated interaction domains-containing protein (.1) AT3G21120 67 / 9e-12 F-box and associated interaction domains-containing protein (.1) AT3G17570 65 / 3e-11 F-box and associated interaction domains-containing protein (.1) AT5G41510 65 / 3e-11 F-box and associated interaction domains-containing protein (.1) AT3G22700 64 / 4e-11 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G129200 [exp] 180 / 4e-52 AT3G07870 110 / 8e-27 F-box and associated interaction domains-containing protein (.1) Potri.011G137200 [exp] 174 / 2e-49 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.008G215800 [exp] 169 / 7e-48 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.008G215901 [exp] 167 / 7e-47 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.008G216223 [exp] 131 / 1e-34 AT3G07870 93 / 4e-21 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 132 / 2e-34 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 130 / 1e-33 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.001G224200 [exp] 127 / 8e-33 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1) Potri.001G396800 [exp] 125 / 1e-31 AT3G07870 99 / 2e-22 F-box and associated interaction domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036105 [exp] 98 / 4e-22 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10038603 [exp] 80 / 5e-16 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10013873 [exp] 79 / 7e-16 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10039024 [exp] 79 / 1e-15 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10037802 [exp] 79 / 1e-15 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10017086 [exp] 78 / 2e-15 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10023239 [exp] 78 / 3e-15 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10008870 [exp] 76 / 7e-15 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10039593 [exp] 73 / 9e-15 AT4G12560 75 / 9e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10008871 [exp] 75 / 2e-14 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0162 [poplar] [flax] FBA PF07734 [poplar] [flax] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Potri.004G000900.1 pacid=42796143 polypeptide=Potri.004G000900.1.p locus=Potri.004G000900 ID=Potri.004G000900.1.v4.1 annot-version=v4.1 ATGAGTCGCTTGCATGGAGTGGGACAATATAAATCTGACGTGAAAGCCCTGCTACAGCCCTGCTACCTAGCTAGCACCATGACAAGAAAGCCCAGCAAAG CTTTCTTGTTCGCTAAAGAACGACGTAGTAAAAAAAGAAGAAATATTTCCAGGCCAGGAGGGATAGGAAAACTTTCAAAGAACGACCTCATCAATATTTT ATCGCGACTCACCGCCAAAACTATTTTGACATGCTGCAGCGTTTGCAAAAGCTGGCGCACTTTAATCTCTGACCCGGAATTCGCTAATCGCCACTTTGAA AGAGACCATGATCAGGAGGAGGTTGTGCTTCGTCCAGATGGTCCTGGATCCCTCTCAAGAACCCTCATCTTGATTGATCTTGATCGGTTAAAGCCTTATG CACAGTTTTCTCTCCCCCTAAATGATCAGCTTCCTTTTTCTGGGATTGAAGTTGTGAATTCATGCAATGGCCTGCTGTACTTGTCCAGTTACCTTGACAA GAACCCAGTTCTTGTATGCAACCCAATTACGAGAGAGTACATCAACATTCCAGCAACTCACACAGATCATCAGCAAGAAAGGCTGCAGGCCGTGGCTTCT GGGCTTGGCTTTAGTCTAAAGAGTAATCAGTATAAGTTGCTGAGGATATTTGATGTGGGATATGGTCATGGTTTTGATAATCTACGGTCACATGGAAGGC AGGCTGAGATATACACCCTTGGCAAAGGATCATGGAGAGTGATCGATCAATTTCCCCCACGAATCCCACACTCTTTCTTGTTTGGAACTTATTTGAAAGG AACTATTTCTTGGGCTTGCGCTAACGATATTAATGATAAATTTGATTTCATAATTTCTTTCAACTTTGACAAGGAGCAGTTCGAATTTGTTTCGCTGCCT CCTTACTCTGCTGCAAATCACAAGGGTATAAGTGATTTAAGAATGCAAGGACTTGGAGGGTGTATCAGTGTATGCGACTTTTCTTGTGCTGAGTATTTCG ACATTTGGCTCCTGAAAGATTTTGGGGGCAAGAAGAAAATCTGGAGCAAAGATTATCGTATTCATATGTTGCATGGAAAGGTTCATCAGCCTATAAGAAT TCTGAATAATGAGGAGATTTTGATGATTCAAGGTTTGAACGCCATGGTTTCTTACAATCACTTGCGTATGAAACTCAGGCGTCATAAAATTTGTGGGATT CAATCACATTTTGGAGCAAGTATTCACATTCCTAGTTTTGTTTCGCTCAAGGATATAGTAGGAGGCGATGAGGTGGAGGTGCTAATTGTCAAGGTAAAAT GCATGTGA
AA sequence Show only first row Show all	>Potri.004G000900.1 pacid=42796143 polypeptide=Potri.004G000900.1.p locus=Potri.004G000900 ID=Potri.004G000900.1.v4.1 annot-version=v4.1 MSRLHGVGQYKSDVKALLQPCYLASTMTRKPSKAFLFAKERRSKKRRNISRPGGIGKLSKNDLINILSRLTAKTILTCCSVCKSWRTLISDPEFANRHFE RDHDQEEVVLRPDGPGSLSRTLILIDLDRLKPYAQFSLPLNDQLPFSGIEVVNSCNGLLYLSSYLDKNPVLVCNPITREYINIPATHTDHQQERLQAVAS GLGFSLKSNQYKLLRIFDVGYGHGFDNLRSHGRQAEIYTLGKGSWRVIDQFPPRIPHSFLFGTYLKGTISWACANDINDKFDFIISFNFDKEQFEFVSLP PYSAANHKGISDLRMQGLGGCISVCDFSCAEYFDIWLLKDFGGKKKIWSKDYRIHMLHGKVHQPIRILNNEEILMIQGLNAMVSYNHLRMKLRRHKICGI QSHFGASIHIPSFVSLKDIVGGDEVEVLIVKVKCM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.004G000900 [exp]	0	1
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.005G026950 [exp]	65.72	0.5290
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Potri.014G099600 [exp]	87.14	0.5136
AT3G20530			Protein kinase superfamily pro...		Potri.011G137000 [exp]	104.24	0.5119
AT4G16447			unknown protein		Potri.011G086300 [exp]	104.65	0.4820
AT2G29620			unknown protein		Potri.009G043000 [exp]	106.23	0.5447
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.003G218300 [exp]	210.97	0.5385
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024750 [exp]	292.44	0.4876

Compare expression of checked genes

Potri.004G000900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.