Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17640 385 / 2e-132 Leucine-rich repeat (LRR) family protein (.1) AT4G03010 263 / 2e-84 RNI-like superfamily protein (.1) AT1G03440 255 / 2e-81 Leucine-rich repeat (LRR) family protein (.1) AT3G59510 125 / 6e-32 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 100 / 5e-23 Leucine-rich repeat (LRR) family protein (.1) AT5G66330 99 / 2e-22 Leucine-rich repeat (LRR) family protein (.1) AT5G07180 99 / 5e-22 ERL2 ERECTA-like 2 (.1) AT3G12610 94 / 4e-21 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT5G61240 93 / 5e-21 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT2G19780 94 / 6e-21 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G023500 [exp] 635 / 0 AT3G17640 350 / 2e-118 Leucine-rich repeat (LRR) family protein (.1) Potri.014G136100 [exp] 267 / 9e-86 AT1G03440 541 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028600 [exp] 126 / 3e-32 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028400 [exp] 115 / 4e-28 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.015G132200 [exp] 105 / 5e-24 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.013G098850 [exp] 103 / 8e-24 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.001G301400 [exp] 101 / 1e-23 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.004G232400 [exp] 102 / 3e-23 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 101 / 6e-23 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008190 [exp] 268 / 2e-86 AT1G03440 576 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10029622 [exp] 265 / 3e-85 AT1G03440 534 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10031601 [exp] 231 / 5e-72 AT1G03440 463 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10033744 [exp] 119 / 7e-31 AT4G03010 244 / 3e-84 RNI-like superfamily protein (.1) Lus10025578 [exp] 122 / 1e-30 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10019356 [exp] 122 / 1e-30 AT3G59510 377 / 1e-128 Leucine-rich repeat (LRR) family protein (.1) Lus10007417 [exp] 121 / 2e-30 AT3G59510 379 / 2e-129 Leucine-rich repeat (LRR) family protein (.1) Lus10042681 [exp] 101 / 4e-24 AT4G03010 205 / 1e-63 RNI-like superfamily protein (.1) Lus10007019 [exp] 101 / 6e-23 AT1G62950 553 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10039641 [exp] 100 / 2e-22 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G001000.1 pacid=42796292 polypeptide=Potri.004G001000.1.p locus=Potri.004G001000 ID=Potri.004G001000.1.v4.1 annot-version=v4.1 ATGGCCAAACCACAATCTCACGCTCTCTTCCTGTTTCTGCTGCTGCTTCTTGGCAATGCATGCCATCCCTCCCACCAAAACCAAAACAAGATAAGCCTCA ACGATCTCGCGGCTCTAGCAGCCATAAAAGACAGCCTTACGGACATTCCAGGCTCAAACTTCTTCTCCACCTGGGACTTCACCTCACCAGATCCCTGCTC CACCTTCTCTGGCATTACTTGCTCTCTCAACCGAGTCACCATCCTCACACTCGGCACTGGTCTCTCTAACACACCTCGACTGGCTGGTTTCCTCTCCCCT TCCCTCTCCAACCTCACAGAATTAACCCAACTCATCCTCTACCCCGGCATCGTCACCGGCCCAATCCCTCCTCAACTGGGTCGACTCAGCAACCTCCGAG TCCTCTCATTAACCAACAATCGGTTAAAAGGTCCCATTCCCAGTTCATTGTCCTCACTCCCCAACCTGCACACTCTCGATCTGAGTTACAACCAGCTCAC CGGGTCAATCCCGGCAGGTCTCTTCACCGAGTTGGCCCAGTTGAAAGTCATGATTCTGGCTTCAAACCAGTTATCCGGCGAGTTGCCAAGAATGGTGTCA GCAGAGATTCTGCATTTAGATTTGAAAGACAACAAATTAACAGGGACATTGCCGTTAAGGCTGCCGTCAACGATCCGTTACTTGTCAGCATCGAAGAACA TGATGGGGGGCCCACTCAACGGCCTCCAATCGTTATCGGAGTTAGAGTTTCTCGACTTAAGCATGAACCAATTCAGTGGGCCCATACCTTCCTCTCTCCT GAGGCCCACTCTCTCTTCCTTGTTTTTGCAACGGAACAATTTATCGGGTGGAGTCCCATCACCGTCACCACCACCATCATCAATGTACGGTGAGGGGTCG ATCGTGGACCTGAGCCACAATTTCCTGACTGGTGAATTGTCACCGGTTCTGGCTGCGGTGGAGACATTGTTCTTGAATAACAACCATCTGATGGGTAGGG TTCCTGAGGAGTACGTGAAGAGCGTGTATGGAGGCAGCACAAAAACACTGTACTTGCAACATAATTACATAACAGGGTTTCCGTTGGAAGCGGGGCTGGC ATTGCCTGATACGTTGTCGTTATGCTTGACGTATAACTGCATGGTTCCGTCTGTGGGGTTGATGGGGTGTCCCGCCAGTGCCGGTGGGCAGCTATCGAGG CCACGGTCACAATGTGTGGTGTTCAACCATGGAAGGCCTATACCTTAA
AA sequence Show only first row Show all	>Potri.004G001000.1 pacid=42796292 polypeptide=Potri.004G001000.1.p locus=Potri.004G001000 ID=Potri.004G001000.1.v4.1 annot-version=v4.1 MAKPQSHALFLFLLLLLGNACHPSHQNQNKISLNDLAALAAIKDSLTDIPGSNFFSTWDFTSPDPCSTFSGITCSLNRVTILTLGTGLSNTPRLAGFLSP SLSNLTELTQLILYPGIVTGPIPPQLGRLSNLRVLSLTNNRLKGPIPSSLSSLPNLHTLDLSYNQLTGSIPAGLFTELAQLKVMILASNQLSGELPRMVS AEILHLDLKDNKLTGTLPLRLPSTIRYLSASKNMMGGPLNGLQSLSELEFLDLSMNQFSGPIPSSLLRPTLSSLFLQRNNLSGGVPSPSPPPSSMYGEGS IVDLSHNFLTGELSPVLAAVETLFLNNNHLMGRVPEEYVKSVYGGSTKTLYLQHNYITGFPLEAGLALPDTLSLCLTYNCMVPSVGLMGCPASAGGQLSR PRSQCVVFNHGRPIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	0	1
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	1.00	0.9463
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.014G073000 [exp]	2.23	0.9065
AT2G25220			Protein kinase superfamily pro...		Potri.003G179500 [exp]	2.44	0.9023
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	3.46	0.9140
AT3G51470			Protein phosphatase 2C family ...		Potri.007G058700 [exp]	4.24	0.8543
AT5G67090			Subtilisin-like serine endopep...		Potri.002G124500 [exp]	6.32	0.8927
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	6.70	0.8884
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.005G070300 [exp]	8.24	0.8561
AT1G30570		HERK2	hercules receptor kinase 2 (.1...		Potri.011G164700 [exp]	10.48	0.8077
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	11.18	0.8457

Compare expression of checked genes

Potri.004G001000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.