Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22300 200 / 7e-65 SOBER1 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1) AT4G22305 177 / 2e-56 alpha/beta-Hydrolases superfamily protein (.1) AT3G15650 42 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G52700 40 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G023000 [exp] 236 / 4e-79 AT4G22300 357 / 1e-125 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1) Potri.006G251100 [exp] 42 / 6e-05 AT5G20060 370 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.018G070700 [exp] 41 / 0.0002 AT5G20060 398 / 8e-142 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.018G030200 [exp] 39 / 0.001 AT5G20060 373 / 4e-132 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019438 [exp] 42 / 0.0001 AT5G20060 387 / 1e-137 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10043294 [exp] 42 / 0.0002 AT5G20060 385 / 3e-136 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10014347 [exp] 40 / 0.0006 AT1G52700 328 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF02230 [poplar] [flax] Abhydrolase_2 Phospholipase/Carboxylesterase
Representative CDS sequence Show only first row Show all	>Potri.004G001701.1 pacid=42796582 polypeptide=Potri.004G001701.1.p locus=Potri.004G001701 ID=Potri.004G001701.1.v4.1 annot-version=v4.1 ATGGTTGCTTCTCGTAGCTTTGTACTATGGCTTCATGGACTGGGTGACTCGGGCCCTGCCAATGTACTCATCAAGACTCTCTTTACTTGTCCTGAATTTC GTACCACCAAATGGTCTTTCCCTTCTGCTCCCATTTCCCCTGTCTCCTGCAATGATTCTCCAAAAGATGAAAGCCGTTCGTTGAAAGCTGTTCGGAATGT GCATGCAATAATAGACAAGGAAATAGCTGCTGGGACAAATCCTGAGAATGTATTTGTGTGTGGATTTAGCCAAGGAGGTGCCTTGACCTTGACTAGTGTT TTGCTGTACCCAAAAACTTTAGGAGGTGGCGAAGTCTTCAGTGGATGGGTTCCCTTTAATTTTTCTATAATGGAACAGATTTCACCAGATGCAAAGAGGG TACTTCCAGCAATAAACACAAGTGCTATCCAATCTCAGAGTTGGAACATGTTGATTCCCCAGAATTCTATTCTAATATGGTTTCCACTGCTGTCATCATA TTTCTGTGATAGGAATATCATATTTCTGTCATCGTATTGCTAG
AA sequence Show only first row Show all	>Potri.004G001701.1 pacid=42796582 polypeptide=Potri.004G001701.1.p locus=Potri.004G001701 ID=Potri.004G001701.1.v4.1 annot-version=v4.1 MVASRSFVLWLHGLGDSGPANVLIKTLFTCPEFRTTKWSFPSAPISPVSCNDSPKDESRSLKAVRNVHAIIDKEIAAGTNPENVFVCGFSQGGALTLTSV LLYPKTLGGGEVFSGWVPFNFSIMEQISPDAKRVLPAINTSAIQSQSWNMLIPQNSILIWFPLLSSYFCDRNIIFLSSYC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.004G001701 [exp]	0	1
AT4G27790			Calcium-binding EF hand family...		Potri.015G010300 [exp]	1.41	0.7073
AT1G34065		SAMC2	S-adenosylmethionine carrier 2...		Potri.002G063901 [exp]	3.46	0.7029
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Potri.019G013800 [exp]	3.46	0.6572
					Potri.001G054301 [exp]	7.21	0.6508
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.005G092950 [exp]	15.09	0.5680
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Potri.006G187600 [exp]	18.33	0.5977
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G123001 [exp]	19.89	0.4990
AT4G01580	B3		AP2/B3-like transcriptional fa...		Potri.007G035700 [exp]	21.42	0.6146
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Potri.010G182900 [exp]	25.09	0.5211
AT4G16447			unknown protein		Potri.011G086300 [exp]	25.45	0.5519

Compare expression of checked genes

Potri.004G001701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.