Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12020 135 / 2e-39 unknown protein AT1G62422 125 / 4e-36 unknown protein AT5G13090 92 / 3e-22 unknown protein AT1G24270 80 / 3e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G022900 [exp] 245 / 2e-82 AT1G12020 115 / 2e-31 unknown protein Potri.012G101200 [exp] 95 / 1e-23 AT5G13090 93 / 2e-22 unknown protein Potri.015G099400 [exp] 96 / 2e-23 AT3G08900 114 / 5e-29 reversibly glycosylated polypeptide 3 (.1) Potri.001G059400 [exp] 78 / 4e-17 AT5G13090 119 / 8e-32 unknown protein Potri.003G168500 [exp] 77 / 7e-17 AT5G13090 100 / 1e-24 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031521 [exp] 112 / 9e-31 AT1G62422 125 / 4e-36 unknown protein Lus10029957 [exp] 111 / 3e-30 AT1G62422 141 / 2e-42 unknown protein Lus10015161 [exp] 95 / 2e-24 AT1G62422 97 / 8e-26 unknown protein Lus10011343 [exp] 74 / 1e-15 AT5G13090 149 / 2e-43 unknown protein Lus10003131 [exp] 70 / 3e-14 AT1G24270 87 / 2e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G001800.1 pacid=42796380 polypeptide=Potri.004G001800.1.p locus=Potri.004G001800 ID=Potri.004G001800.1.v4.1 annot-version=v4.1 ATGAAGAAGCTATACCGTAAAGGCAAGGTGCATCCATCAACGCCAGTAATATCAGACCACCTGTCCTTTCTTCCGGTCACCATCCTTGCCCTCACAGCTG CTCTCTCCCCAGAGGACAGAGAGGTCTTGGCCTATCTTATCTCCTGCTCTGGCAATAACAATATCTTCTACAGCAACTGGTCCAATATTAATAGCCGCAA GAGTAGTTGTAACCAAAAGACAACTTCTTACACCAAGAGCAGCAGCAGCAGCAGCAGTCATGACCACCCTCCTATGTTCAACTGTGATTGTTTTAGGTGC TACATGAGTTATTGGATTAGATGGGACTCGTCTCCTAACCGGCAGCTCATTCATGAGATTATTGATGCTTTTGAGGATTGGTTATTGAAACAAGGTAAGA GTAGTGCTACAAGCGGCAACAAGAACAGGAAAGACAGGAAAAGGAAGGGAAACAGTCGAGGTTCTGGTGAGTTGATCAAGAGGCCAGAGTTGCGAATGAA GGACAAGCAGCTGGATGAGTCTGATTCACTAGTGGATGGAAATAGCAGTGGTAGTGGTGGGAGTGAAGGAGTTGGTGGTGGTGGTGAGGAAGGGACAGAG AAGGGGTCTGTCAGGAGGCTGGTGAGCTTCATCGGGGAGAGGATTTGGGGTGTTTTGGGTTAG
AA sequence Show only first row Show all	>Potri.004G001800.1 pacid=42796380 polypeptide=Potri.004G001800.1.p locus=Potri.004G001800 ID=Potri.004G001800.1.v4.1 annot-version=v4.1 MKKLYRKGKVHPSTPVISDHLSFLPVTILALTAALSPEDREVLAYLISCSGNNNIFYSNWSNINSRKSSCNQKTTSYTKSSSSSSSHDHPPMFNCDCFRC YMSYWIRWDSSPNRQLIHEIIDAFEDWLLKQGKSSATSGNKNRKDRKRKGNSRGSGELIKRPELRMKDKQLDESDSLVDGNSSGSGGSEGVGGGGEEGTE KGSVRRLVSFIGERIWGVLG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12020			unknown protein		Potri.004G001800 [exp]	0	1
AT2G11890			adenylate cyclases (.1.2)		Potri.006G062000 [exp]	1.73	0.7253
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Potri.009G120800 [exp]	6.16	0.7211
AT5G13810			Glutaredoxin family protein (....		Potri.001G026600 [exp]	10.39	0.6691
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.016G030900 [exp]	12.36	0.7076
AT4G36880		CP1	cysteine proteinase1 (.1)		Potri.005G141600 [exp]	12.96	0.6477
AT3G03440			ARM repeat superfamily protein...		Potri.004G088800 [exp]	15.96	0.6184
AT4G39140			RING/U-box superfamily protein...		Potri.009G120000 [exp]	24.91	0.6453
AT2G36350			Protein kinase superfamily pro...		Potri.009G146700 [exp]	26.15	0.6109
AT3G08760		ATSIK	Protein kinase superfamily pro...		Potri.016G136400 [exp]	26.26	0.6191
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.001G075600 [exp]	26.94	0.6405

Compare expression of checked genes

Potri.004G001800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.