Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62400 620 / 0 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G58950 306 / 5e-100 Protein kinase superfamily protein (.1) AT4G31170 290 / 3e-95 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 275 / 1e-89 Protein kinase superfamily protein (.1) AT3G46930 246 / 1e-77 Protein kinase superfamily protein (.1) AT4G38470 246 / 2e-76 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT5G01850 236 / 2e-75 Protein kinase superfamily protein (.1) AT5G50180 234 / 2e-74 Protein kinase superfamily protein (.1) AT4G35780 241 / 3e-74 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 236 / 6e-73 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G022800 [exp] 709 / 0 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 399 / 7e-139 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 396 / 1e-137 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.005G082200 [exp] 340 / 3e-113 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.007G085300 [exp] 334 / 3e-111 AT5G58950 604 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 296 / 1e-97 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 296 / 2e-97 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.018G001900 [exp] 290 / 2e-95 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 290 / 3e-95 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015541 [exp] 652 / 0 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020018 [exp] 650 / 0 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10042122 [exp] 400 / 7e-139 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015436 [exp] 325 / 4e-108 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10011173 [exp] 324 / 8e-108 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10025442 [exp] 319 / 8e-106 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10000237 [exp] 306 / 4e-104 AT1G62400 313 / 3e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10002374 [exp] 306 / 1e-103 AT1G62400 312 / 7e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020374 [exp] 288 / 4e-94 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10022653 [exp] 251 / 3e-79 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.004G001900.2 pacid=42794843 polypeptide=Potri.004G001900.2.p locus=Potri.004G001900 ID=Potri.004G001900.2.v4.1 annot-version=v4.1 ATGGCGAGTTCATGTTTCCATGCATTTCGACTTCGAAGATCGAAGAGCAAACCATTAAAAATCTCTTCCTCGTCAAAATACCATTCGAATTCTGAAATGG AGAACTTGGAGAGGAAGAGATTTGACAGTTTGGAGTCATGGTCAATGATTTTGGAATCTGAGAATGTAGAGACTTGGGAGGCACCAAAGGAGGACCAAGA GGAATGGACTGCTGACCTTTCGCAGTTATTTATAGGCAACAAGTTTGCCTCTGGAGCTCATAGTAGGATTTATCGTGGAATTTACAAGCAGCGAGCGGTT GCTGTCAAAATGGTGAGAATTCCAACCCAAAAGGAGGAGACTAGAGCTTTCCTTGAACAGCAGTTCAAATGTGAAGTTGCTCTGCTTTCGCGTCTCTTTC ATCCCAATATAGTGCAGTTCATTGCAGCTTGTAAAAAGCCACCCGTGTACTGTATCATCACAGAGTACATGTCACAAGGAACTCTGAGGATGTATCTCAA CAAGAAAGAGCCATACTCACTTTCGACAGAAACAATTCTGAGATTGGCTCTTGATATATCACGAGGAATGGAGTATCTTCATTCACAGGGAGTCATCCAC AGAGACCTGAAATCAAATAATTTGCTTCTAAATGATGAAATGCGGGTTAAGGTTGCTGATTTTGGTACATCATGTCTAGAAACACAGTGCCAAGAAACCA AAGGGAACAAGGGAACCTACCGCTGGATGGCACCAGAGATGATCAAGGAGAAACATTGTACTCGGAAAGTTGATGTGTATAGTTTTGGGATTGTGTTGTG GGAACTAACTACAGCTTTGCTTCCCTTTCAAGGAATGACCCCTGTGCAAGCTGCATTTGCTGTAGCAGAGAAGAACGAGCGGCCTCCACTGCCTGCTAGT TGCCAGCCTGCACTTGCACACTTGATAAAGCGCTGCTGGGCAGCCAACCCATCCAAGCGACCAGATTTCAGTTACATTGTTTCTGCTTTGGAGAAGTACG ATGAATGTGTCAAAGAGGGCCTTCCTCTTACTTCACACTCGGGACTTGTCAACCGGAATGTCATTCTGGAACGCTTGAAAGGCTGTGTATCCATGAGCTC ATCTGTAACTGTACATGCTTAA
AA sequence Show only first row Show all	>Potri.004G001900.2 pacid=42794843 polypeptide=Potri.004G001900.2.p locus=Potri.004G001900 ID=Potri.004G001900.2.v4.1 annot-version=v4.1 MASSCFHAFRLRRSKSKPLKISSSSKYHSNSEMENLERKRFDSLESWSMILESENVETWEAPKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAV AVKMVRIPTQKEETRAFLEQQFKCEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIH RDLKSNNLLLNDEMRVKVADFGTSCLETQCQETKGNKGTYRWMAPEMIKEKHCTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPAS CQPALAHLIKRCWAANPSKRPDFSYIVSALEKYDECVKEGLPLTSHSGLVNRNVILERLKGCVSMSSSVTVHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.004G001900 [exp]	0	1
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Potri.008G064400 [exp]	7.74	0.8583	COI1.2
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.013G001300 [exp]	14.89	0.7767
AT5G62620			Galactosyltransferase family p...		Potri.012G072400 [exp]	17.23	0.8468
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Potri.005G010800 [exp]	17.88	0.8025
AT2G38570			unknown protein		Potri.006G109500 [exp]	18.84	0.8152
AT2G14910			unknown protein		Potri.001G298200 [exp]	19.59	0.8251
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.016G058700 [exp]	25.45	0.8030
AT3G59910			Ankyrin repeat family protein ...		Potri.007G146500 [exp]	31.08	0.7883
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G132300 [exp]	32.00	0.7214
AT4G37560			Acetamidase/Formamidase family...		Potri.005G145400 [exp]	32.32	0.8007

Compare expression of checked genes

Potri.004G001900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.