Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22290 381 / 1e-129 Ubiquitin-specific protease family C19-related protein (.1) AT1G16860 314 / 4e-103 Ubiquitin-specific protease family C19-related protein (.1) AT1G78880 302 / 1e-98 Ubiquitin-specific protease family C19-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G022600 [exp] 560 / 0 AT4G22290 451 / 4e-157 Ubiquitin-specific protease family C19-related protein (.1) Potri.008G006100 [exp] 315 / 4e-103 AT1G16860 714 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252000 [exp] 313 / 1e-102 AT1G16860 685 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.008G006000 [exp] 311 / 1e-101 AT1G16860 652 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252500 [exp] 306 / 6e-100 AT1G16860 646 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252400 [exp] 305 / 2e-99 AT1G16860 647 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.002G176200 [exp] 210 / 6e-65 AT4G22290 189 / 6e-57 Ubiquitin-specific protease family C19-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033374 [exp] 300 / 4e-97 AT1G16860 702 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Lus10034825 [exp] 289 / 5e-92 AT1G16860 677 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Lus10005996 [exp] 173 / 2e-50 AT1G16860 202 / 2e-61 Ubiquitin-specific protease family C19-related protein (.1) Lus10030215 [exp] 166 / 1e-46 AT1G78880 195 / 3e-57 Ubiquitin-specific protease family C19-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G002000.1 pacid=42796674 polypeptide=Potri.004G002000.1.p locus=Potri.004G002000 ID=Potri.004G002000.1.v4.1 annot-version=v4.1 ATGGGTACCCGAATTCAGTCTCACCAGCTCAAAAACGGGTTGTTCGTGTCTGGTCGACCTGAACAGCAACAAAAAGAGAAACAACCCACCATGGCAGCAC GCGCAGTGCCTTACACAGGCGGTGACATTAAGAAATCCGGCGAGTTAGGCAAAATGTTTGACATCCCAGCAGTGGTTGAACCACCAAAGGCACCGCCTTC ACGTGCTTCTACTTCTTCAAGTGGATCCATCAGAAACTCTTCTTCTGGTCCTATTAGAAATTCTTCAGGTCCTTTGAACGTTGTCCTACCGACAGGGCTC TTCACCTCAGGTCCACTTGGTTCCGGCCCATTGGGCTCTGGCCCACAAAGAAGATCGGGCCAGCTTGACAACAGCGCTGTCGGTTCGGGTACAGGATCCG GATCAAGCAAGGCACTTTATGGGTCAGCAGTGACTAGCTTGGCTGGTGATGTGAAGGTGGGGTTTAGGGTTTCAAGGCCAGTGGTGTGGGTGGTGATGGT AGTGGTGGTGATGGGGTTGCTTGTTGGGGCTTTTTTGATGGTTGCAGTTAAAAAAGCTGTGATCTTACTGGCTGTTGGGGCTGTTTTGGTGCCTTTGATT GTGGGGTTGATTTGGAATTATGCATGGGGAAGGAGAGGGTTGTTAGGGTTTGTTAGGAGATACCCTGATACTGAGCTTAGAGGAGCCATTGATGGACAGT ATGTCAAGGTTACTGGGGTTGTCACCTGTGGCAGTATACCTTTGGAGTCATCTTACCAGAAGGTACACAGATGTGTATATGTTTCAACAGAGTTGTATGA ATTTAGAGGGTTGGGTGGAAAGTCTGCCCATTCGAAGCACCGCTTTTTCTCATGGGGATCCAGACATTCAGAGATGTTTGTTGCTGATTTTTACATATCA GATTTCCAATCTGGACTAAGAGCACTAGTAAAGGCGGGCTATGGAGCCAAGGTGGCTCCATTTGTCAGGGAAGCTACAGTAGTGGACGTGAAAAAGGAGA ACATGGACTTGTCTTCCAGCTTTTTACGCTGGTTAGCTGATCGCAACCTTTCAAGTGATGACAGGATCATGCGTCTCAAAGAAGGGTATATCAAAGAAGG GAGCACTGTAAGCGTGATGGGTGTTGTTCGGCGACACGATAACGTGCTGATGATTGTCCCCCCCCAAGAGCCTCTCTCAACAGGTTGTCAGTGGTTCCGA TGCCTCCTCCCAACCTATGTTGAAGGCCTTGTTTTGACATGCGATGATAATCAAAATGCTGACGTGGTTCCCGTGTAG
AA sequence Show only first row Show all	>Potri.004G002000.1 pacid=42796674 polypeptide=Potri.004G002000.1.p locus=Potri.004G002000 ID=Potri.004G002000.1.v4.1 annot-version=v4.1 MGTRIQSHQLKNGLFVSGRPEQQQKEKQPTMAARAVPYTGGDIKKSGELGKMFDIPAVVEPPKAPPSRASTSSSGSIRNSSSGPIRNSSGPLNVVLPTGL FTSGPLGSGPLGSGPQRRSGQLDNSAVGSGTGSGSSKALYGSAVTSLAGDVKVGFRVSRPVVWVVMVVVVMGLLVGAFLMVAVKKAVILLAVGAVLVPLI VGLIWNYAWGRRGLLGFVRRYPDTELRGAIDGQYVKVTGVVTCGSIPLESSYQKVHRCVYVSTELYEFRGLGGKSAHSKHRFFSWGSRHSEMFVADFYIS DFQSGLRALVKAGYGAKVAPFVREATVVDVKKENMDLSSSFLRWLADRNLSSDDRIMRLKEGYIKEGSTVSVMGVVRRHDNVLMIVPPQEPLSTGCQWFR CLLPTYVEGLVLTCDDNQNADVVPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22290			Ubiquitin-specific protease fa...		Potri.004G002000 [exp]	0	1
AT1G29730			Leucine-rich repeat transmembr...		Potri.016G012300 [exp]	5.29	0.9259
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Potri.017G112300 [exp]	6.16	0.9321
AT4G18830	OFP	ATOFP5, OFP5	ovate family protein 5 (.1)		Potri.004G062100 [exp]	6.70	0.8999
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.001G267700 [exp]	11.83	0.8979
AT2G42840		PDF1	protodermal factor 1 (.1)		Potri.005G200900 [exp]	14.17	0.9078
AT3G16070			unknown protein		Potri.001G182500 [exp]	15.16	0.8834
AT5G22430			Pollen Ole e 1 allergen and ex...		Potri.009G019300 [exp]	16.97	0.9058
AT4G38840			SAUR-like auxin-responsive pro...		Potri.004G165450 [exp]	18.38	0.8914
AT1G29730			Leucine-rich repeat transmembr...		Potri.010G155000 [exp]	25.82	0.8805
AT3G14470			NB-ARC domain-containing disea...		Potri.008G212200 [exp]	26.15	0.8221	FRGA-A30.20

Compare expression of checked genes

Potri.004G002000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.