Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60440 107 / 3e-28 MADS AGL62 AGAMOUS-like 62 (.1) AT2G24840 100 / 2e-25 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT4G36590 87 / 5e-21 MADS MADS-box transcription factor family protein (.1) AT1G01530 80 / 3e-18 MADS AGL28 AGAMOUS-like 28 (.1) AT1G65360 78 / 2e-17 MADS AGL23 AGAMOUS-like 23 (.1) AT2G34440 72 / 7e-16 MADS AGL29 AGAMOUS-like 29 (.1) AT3G66656 68 / 3e-14 MADS AGL91 AGAMOUS-like 91 (.1) AT1G17310 66 / 4e-13 MADS MADS-box transcription factor family protein (.1) AT4G37940 64 / 3e-12 MADS AGL21 AGAMOUS-like 21 (.1) AT1G72350 62 / 1e-11 MADS MADS-box transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G040600 [exp] 129 / 1e-37 AT5G60440 117 / 7e-32 AGAMOUS-like 62 (.1) Potri.017G039800 [exp] 128 / 3e-37 AT5G60440 116 / 1e-31 AGAMOUS-like 62 (.1) Potri.017G040700 [exp] 114 / 6e-32 AT5G60440 122 / 5e-34 AGAMOUS-like 62 (.1) Potri.009G084100 [exp] 109 / 1e-29 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 103 / 4e-27 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 103 / 6e-27 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.016G118900 [exp] 101 / 1e-26 AT5G60440 123 / 4e-34 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 99 / 1e-25 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 95 / 2e-24 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020511 [exp] 96 / 3e-24 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10012449 [exp] 95 / 1e-23 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10030663 [exp] 81 / 6e-19 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10037450 [exp] 75 / 2e-16 AT5G60440 101 / 7e-26 AGAMOUS-like 62 (.1) Lus10030824 [exp] 74 / 2e-16 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10016563 [exp] 72 / 9e-16 AT2G34440 134 / 5e-40 AGAMOUS-like 29 (.1) Lus10031073 [exp] 73 / 2e-15 AT5G60440 129 / 5e-36 AGAMOUS-like 62 (.1) Lus10035456 [exp] 72 / 5e-15 AT5G60440 124 / 5e-34 AGAMOUS-like 62 (.1) Lus10015726 [exp] 71 / 5e-15 AT5G60440 102 / 2e-26 AGAMOUS-like 62 (.1) Lus10015271 [exp] 69 / 2e-14 AT2G24840 114 / 6e-31 DIANA, AGAMOUS-like 61 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.004G002400.1 pacid=42795383 polypeptide=Potri.004G002400.1.p locus=Potri.004G002400 ID=Potri.004G002400.1.v4.1 annot-version=v4.1 ATGGCCACCAAAGTGAAGAAGCAAAGCCTCGGCCGCCAAAAGATCGAGATCAAGAAAATAGAAAACAAAAGCTCCCTAGAAGTTACTTTCACAAAGCGTC GCAAAGGTCTTTTTAACAAGGCTAGTGAGCTCTGCATCCTAACCGGAGCTGAGGCAGCAGTTATTGCATTCTCTCCGGGCAAGAAGGCCTTTGCCTTTGG TTTTCCCTCTGTGGACACCGTTATAGACCGCTATATAAGCGAAAATACAGAAGAGGGAAGATCAGTGAATACAAGTGCTAGTCATCATCGAGTGGTCCAG GAGAGCAGGAAGCAGTATGCAGAGGCCCTTGCGAAGAAGGAGGAGGAAAAGAAGCGAGTGGAAACGATGAAAGAAGGTGGGACAGTTGGGTTTGGACGGG ATAGGTTTTGGTGGGATCTAAGTATAGAAGACATGGGATTGGAGGAGCTTGAGCGGTATGTGGCTTCAATGGAAGAGCTTAAGAAGAATTTGGAATTAGG GTTGATGAGTTGGAGAAGGCAAGCAACTCTCCATCCGGATTCTTGGATTTGGATTCCGGCCTCAACGCAAAGGGTATTGATAGATATATATGAGAGTATC TGCATGAATTAA
AA sequence Show only first row Show all	>Potri.004G002400.1 pacid=42795383 polypeptide=Potri.004G002400.1.p locus=Potri.004G002400 ID=Potri.004G002400.1.v4.1 annot-version=v4.1 MATKVKKQSLGRQKIEIKKIENKSSLEVTFTKRRKGLFNKASELCILTGAEAAVIAFSPGKKAFAFGFPSVDTVIDRYISENTEEGRSVNTSASHHRVVQ ESRKQYAEALAKKEEEKKRVETMKEGGTVGFGRDRFWWDLSIEDMGLEELERYVASMEELKKNLELGLMSWRRQATLHPDSWIWIPASTQRVLIDIYESI CMN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.004G002400 [exp]	0	1
AT4G20190			unknown protein		Potri.001G074300 [exp]	3.46	0.8635
AT1G67410			Exostosin family protein (.1)		Potri.010G227901 [exp]	8.94	0.8366
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G011000 [exp]	12.72	0.7435
AT5G24810			ABC1 family protein (.1.2)		Potri.012G082950 [exp]	17.49	0.8066
AT1G80860		ATPLMT	ARABIDOPSIS PHOSPHOLIPID N-MET...		Potri.003G182400 [exp]	17.88	0.8081
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.004G053200 [exp]	19.33	0.8224
AT2G15880			Leucine-rich repeat (LRR) fami...		Potri.004G146350 [exp]	19.74	0.7866
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.012G043501 [exp]	19.89	0.7678
AT2G45340			Leucine-rich repeat protein ki...		Potri.014G068700 [exp]	23.36	0.8191
AT1G10330			Tetratricopeptide repeat (TPR)...		Potri.018G003300 [exp]	30.74	0.7990

Compare expression of checked genes

Potri.004G002400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.