Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22260 425 / 3e-149 IM1, IM IMMUTANS, Alternative oxidase family protein (.1) AT5G64210 68 / 1e-12 AOX2 alternative oxidase 2 (.1) AT1G32350 64 / 4e-11 AOX1D alternative oxidase 1D (.1) AT3G22370 63 / 7e-11 AtHSR3, ATAOX1A, AOX1A hyper-sensitivity-related 3, alternative oxidase 1A (.1) AT3G27620 59 / 1e-09 AOX1C alternative oxidase 1C (.1) AT3G22360 59 / 2e-09 AOX1B alternative oxidase 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G021800 [exp] 548 / 0 AT4G22260 457 / 7e-162 IMMUTANS, Alternative oxidase family protein (.1) Potri.012G001600 [exp] 64 / 3e-11 AT3G22370 475 / 4e-169 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.012G001500 [exp] 63 / 7e-11 AT3G22370 518 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.015G019800 [exp] 61 / 3e-10 AT3G22370 526 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.003G103900 [exp] 58 / 2e-09 AT1G32350 433 / 1e-153 alternative oxidase 1D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002872 [exp] 435 / 2e-151 AT4G22260 466 / 1e-163 IMMUTANS, Alternative oxidase family protein (.1) Lus10037518 [exp] 229 / 3e-73 AT4G22260 273 / 1e-90 IMMUTANS, Alternative oxidase family protein (.1) Lus10020523 [exp] 69 / 1e-12 AT5G64210 462 / 4e-164 alternative oxidase 2 (.1) Lus10005372 [exp] 68 / 2e-12 AT5G64210 453 / 2e-160 alternative oxidase 2 (.1) Lus10035670 [exp] 56 / 2e-08 AT3G22370 519 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [poplar] [flax] Ferritin PF01786 [poplar] [flax] AOX Alternative oxidase
Representative CDS sequence Show only first row Show all	>Potri.004G002600.1 pacid=42795644 polypeptide=Potri.004G002600.1.p locus=Potri.004G002600 ID=Potri.004G002600.1.v4.1 annot-version=v4.1 ATGATTCTCTCTTCTTCTTCTTCTTCTGCTACGGTATTCACAATCTCATCCTCTTCCTCTACTACTAAAACCAGGAGATATATTGCTAAAACCCCACAAA GCCCTTTTCTTTTCAAACGCAACTTCAACCCCACTTCACTTCCATTCCCTCCTTCCACAAGGAGTGCAAAGTTTTGTAGAGTTCAAGCAACTGTATTCAA GGAAAATGAAGATGAGAAAGTTGTTGTAGAGGAATCATTTAGACCCAGCACTTTCACTCATGGCCCGGAGAACTCACCACAACCTTCATCCCCTACTGAA TTAGACAAGTGGGTTGTCAAGCTTGAACAATCTGTCAATGTCTTTCTCACTGACTCGGTGGTAACGATTCTTGATGCATTGTATCATGGCCGTGATTATG CTAGGTTCTATGTTTTGGAAACTATTGCTAGAGTTCCTTATTTTGCCTTTATATCTGTTCTTCATTTGTATGAGAGTTTTGGGTGGTGGAGAAGATCTGA TTATATCAAAGTGCATTTTGCTGAGAGCTGGAATGAAATGCATCACTTGCTTATTATGGAAGAATTGGGTGGCAATTCTTTGTGGTTTGACCGCTTTCTT GCTCAGCACATGGCATTTTTTTATTACATCATGACAGTCTTAATGTATGCATTAAGCCCAAGAATGGCATATCACTTCTCTGAATGTGTTGAGAACCACG CATTTGAAACTTATGACAAATTTATCAAGGCACAAGGAGAGGATTTGAGAAAAATGCCTGCACCTGAGGTTGCTGTAAAATATTACACTGAGGGTGATTT GTACTTGTTTGATGAATTTCAAACTTCCAGAGCTCCCCATTCTCGTAGGCCAAAAATAGAGAATTTGTATGATGTATTTCTGAACATCAGAGATGATGAG GCTGAACATTGTAAGACCATGGGGGCCTGCCAAACTCATGGAAATCTCCGCTCTCCACATTCATATCCAGAGGATGCTTTCGAAGATGATACTGGCAGTG AGCTTCGCCAAGCAGATTGTGGAGGTGTTGCTGATTGTTTAGAGAAATCTGTAACTTCTCCTCCGTCAAAGCAAAAGCAAAATATTTGA
AA sequence Show only first row Show all	>Potri.004G002600.1 pacid=42795644 polypeptide=Potri.004G002600.1.p locus=Potri.004G002600 ID=Potri.004G002600.1.v4.1 annot-version=v4.1 MILSSSSSSATVFTISSSSSTTKTRRYIAKTPQSPFLFKRNFNPTSLPFPPSTRSAKFCRVQATVFKENEDEKVVVEESFRPSTFTHGPENSPQPSSPTE LDKWVVKLEQSVNVFLTDSVVTILDALYHGRDYARFYVLETIARVPYFAFISVLHLYESFGWWRRSDYIKVHFAESWNEMHHLLIMEELGGNSLWFDRFL AQHMAFFYYIMTVLMYALSPRMAYHFSECVENHAFETYDKFIKAQGEDLRKMPAPEVAVKYYTEGDLYLFDEFQTSRAPHSRRPKIENLYDVFLNIRDDE AEHCKTMGACQTHGNLRSPHSYPEDAFEDDTGSELRQADCGGVADCLEKSVTSPPSKQKQNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.004G002600 [exp]	0	1
AT4G22240			Plastid-lipid associated prote...		Potri.004G003200 [exp]	3.60	0.9589	Pt-CHRC.3
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.004G176750 [exp]	6.48	0.9579
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.010G051900 [exp]	7.07	0.9543
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.006G127200 [exp]	9.79	0.9547	RBP29.2
AT5G38260			Protein kinase superfamily pro...		Potri.007G125800 [exp]	11.31	0.9468
AT2G37240			Thioredoxin superfamily protei...		Potri.006G133100 [exp]	12.00	0.9555
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Potri.004G124800 [exp]	14.49	0.9316
AT3G11420			Protein of unknown function (D...		Potri.010G199900 [exp]	15.96	0.9411
AT3G26070			Plastid-lipid associated prote...		Potri.003G020700 [exp]	16.91	0.9445
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.010G238300 [exp]	17.02	0.9080

Compare expression of checked genes

Potri.004G002600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.