Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05000 287 / 1e-99 AtPFA-DSP1 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT4G03960 279 / 1e-96 AtPFA-DSP4 plant and fungi atypical dual-specificity phosphatase 4, Phosphotyrosine protein phosphatases superfamily protein (.1) AT2G32960 253 / 3e-85 AtPFA-DSP2 plant and fungi atypical dual-specificity phosphatase 2, Phosphotyrosine protein phosphatases superfamily protein (.1) AT3G02800 209 / 5e-69 AtPFA-DSP3 plant and fungi atypical dual-specificity phosphatase 3, Tyrosine phosphatase family protein (.1) AT5G16480 200 / 3e-65 AtPFA-DSP5 plant and fungi atypical dual-specificity phosphatase 5, Phosphotyrosine protein phosphatases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G021100 [exp] 306 / 4e-107 AT4G03960 288 / 4e-100 plant and fungi atypical dual-specificity phosphatase 4, Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.014G159100 [exp] 294 / 4e-102 AT1G05000 310 / 3e-108 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.002G224000 [exp] 290 / 7e-101 AT1G05000 300 / 9e-105 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.013G086500 [exp] 211 / 2e-69 AT3G02800 296 / 2e-103 plant and fungi atypical dual-specificity phosphatase 3, Tyrosine phosphatase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031529 [exp] 289 / 2e-100 AT1G05000 304 / 2e-106 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10035333 [exp] 284 / 5e-98 AT1G05000 291 / 2e-100 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10029991 [exp] 280 / 2e-96 AT1G05000 296 / 1e-102 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10015154 [exp] 280 / 2e-96 AT1G05000 298 / 3e-103 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF03162 [poplar] [flax] Y_phosphatase2 Tyrosine phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.004G002800.1 pacid=42795762 polypeptide=Potri.004G002800.1.p locus=Potri.004G002800 ID=Potri.004G002800.1.v4.1 annot-version=v4.1 ATGAGAGTTGGTAGCAGGAGTGATTTAGGAGGGGGGGAGAGAGGGAGTCTGATTGAGGTCTCGCCGGCAGATAATAATCGGCCGGCCATGGGAGAGGAGA GGGAGGGAGAAGAAGAGCTGTTGGTGCCACCGCTGAATTTTGCGATGGTGGATAATGGAATATTTAGGTCGGGTTTCCCTGATTCTGCTAATTTCAGCTT CTTGCAATCCCTAGGTCTACGTTCCATTCTATATTTGTGCCCAGAACCATATCCAGAAGCAAATTATGAGTTCTTGAAGGATAATGGAATTCGGATTTTT CAGTTTGGAATTGAAATGTGCAAGGAATCTTTTGCAAACATTCCAGAGGAAACAATCCGCGAAGCATTGAAAGTAATCCTTGATGTAAAGAATCACCCTG TCTTAGTTCATTGCAAGCGAGGAAAGCATCGTACTGGATGCCTTGTGGGATGTTTGAGAAAGTTGCAAAGATGGTGCTTGTCATCTATATTTGATGAATA CCAGAGATACGCAGCAGCCAAGGCTAGAGTGTCAGATCAGAGGTTTATGGAGTTGTTTGACATTTCAAGCTTTAAGAATTTACCATTGTCCTTTTCCTCA ACCAGATCTTCTGCAAACAGATAA
AA sequence Show only first row Show all	>Potri.004G002800.1 pacid=42795762 polypeptide=Potri.004G002800.1.p locus=Potri.004G002800 ID=Potri.004G002800.1.v4.1 annot-version=v4.1 MRVGSRSDLGGGERGSLIEVSPADNNRPAMGEEREGEEELLVPPLNFAMVDNGIFRSGFPDSANFSFLQSLGLRSILYLCPEPYPEANYEFLKDNGIRIF QFGIEMCKESFANIPEETIREALKVILDVKNHPVLVHCKRGKHRTGCLVGCLRKLQRWCLSSIFDEYQRYAAAKARVSDQRFMELFDISSFKNLPLSFSS TRSSANR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Potri.004G002800 [exp]	0	1
AT5G11580			Regulator of chromosome conden...		Potri.018G044400 [exp]	1.73	0.8875
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Potri.004G175200 [exp]	2.44	0.8885
AT4G12710			ARM repeat superfamily protein...		Potri.014G170100 [exp]	4.58	0.8837
AT3G25470			bacterial hemolysin-related (....		Potri.014G175500 [exp]	5.47	0.9142
AT1G62600			Flavin-binding monooxygenase f...		Potri.001G121100 [exp]	12.84	0.8538
AT2G45830		DTA2	downstream target of AGL15 2 (...		Potri.014G081600 [exp]	15.42	0.8623
AT5G46030			unknown protein		Potri.011G097300 [exp]	15.74	0.8557
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Potri.017G090500 [exp]	15.87	0.8745
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Potri.001G337200 [exp]	19.59	0.8586
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.019G089000 [exp]	20.61	0.8581

Compare expression of checked genes

Potri.004G002800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.