Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03965 135 / 3e-39 RING/U-box superfamily protein (.1) AT4G22250 128 / 1e-36 RING/U-box superfamily protein (.1) AT1G62370 108 / 4e-29 RING/U-box superfamily protein (.1) AT3G25030 99 / 7e-25 RING/U-box superfamily protein (.1.2) AT4G13100 97 / 3e-24 RING/U-box superfamily protein (.1.2.3.4.5) AT3G07120 77 / 4e-16 RING/U-box superfamily protein (.1) AT3G06140 47 / 4e-06 RING/U-box superfamily protein (.1) AT2G38195 42 / 0.0001 RING/U-box superfamily protein (.1.2) AT2G34920 42 / 0.0002 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT5G04460 42 / 0.0004 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G224200 [exp] 112 / 8e-31 AT4G03965 116 / 7e-33 RING/U-box superfamily protein (.1) Potri.014G158900 [exp] 104 / 1e-27 AT4G22250 103 / 2e-27 RING/U-box superfamily protein (.1) Potri.002G243800 [exp] 97 / 2e-23 AT3G07120 191 / 3e-57 RING/U-box superfamily protein (.1) Potri.011G020800 [exp] 88 / 9e-22 AT4G03965 68 / 1e-14 RING/U-box superfamily protein (.1) Potri.007G081900 [exp] 46 / 1e-05 AT2G22010 1712 / 0.0 related to KPC1 (.1.2) Potri.005G083800 [exp] 45 / 3e-05 AT2G22010 1726 / 0.0 related to KPC1 (.1.2) Potri.010G030600 [exp] 44 / 7e-05 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 43 / 0.0001 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 42 / 0.0002 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029993 [exp] 96 / 3e-25 AT4G03965 118 / 2e-34 RING/U-box superfamily protein (.1) Lus10015152 [exp] 96 / 1e-24 AT4G03965 123 / 1e-35 RING/U-box superfamily protein (.1) Lus10035335 [exp] 95 / 1e-24 AT4G22250 114 / 4e-33 RING/U-box superfamily protein (.1) Lus10038180 [exp] 82 / 3e-18 AT3G07120 122 / 6e-33 RING/U-box superfamily protein (.1) Lus10025921 [exp] 82 / 3e-18 AT3G07120 117 / 3e-31 RING/U-box superfamily protein (.1) Lus10016817 [exp] 47 / 9e-06 AT2G22010 1406 / 0.0 related to KPC1 (.1.2) Lus10035857 [exp] 46 / 1e-05 AT2G22010 1667 / 0.0 related to KPC1 (.1.2) Lus10034030 [exp] 45 / 3e-05 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10004419 [exp] 42 / 0.0002 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10000533 [exp] 42 / 0.0003 AT1G54150 349 / 5e-119 E3 Ubiquitin ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.004G003101.2 pacid=42796362 polypeptide=Potri.004G003101.2.p locus=Potri.004G003101 ID=Potri.004G003101.2.v4.1 annot-version=v4.1 ATGAGTCAACTCCGTGTGTTACTGCAGGAACCAGAAAGAGAAGCAATAACAATTCTTGCATTGCTGGGTGACCATATGGACGGCGTAGATTCTTCAAGGA GAAGATCAAGAAGAATGAGTCTTAAGGAACGGCTAGGACTAAGAGGTTTGGGTTGTTGTGGGGCCACTTGGGGTTTCAGTCCCACCACCATCGTCACCAA TGATGATCTCGATATTGATGAAGAACGGGAAGAGATAGAGGCTGTGGTAAACACGGGCCAGGAAGAGGAGGAGGAGGAGGAGAGAGTTTCTGATCCGGGC TGTTTGGATCCGAACCCGAGTCCGAACCAACAGCACTCTTCGGGTATGAACTTAGCTGCTGCTTTGGCCGCAGAAAGACAATTCAGGGAGGCAGGAAGTA ACATCATGGAGCCCACCAGTGTCACTGATGTGGGAACCGCAAATGTTGGTTTGACGGGGACGCCGTTAAGGGTGTCGTTGATGAGGCTGTTAGAGGAGAG CACGGAAGGTGGTGGAGGAGGAGAAGGAGTAATTACGGAGACGACGGTGGGGAATGATACAGTGTGTTGCGTGTGCATGGGGAGGAAAAAAGGAGCAGCA TTTATCCCATGTGGGCACACGTTTTGCAGGGTGTGTTCGAGGGAGCTTTGGTTGAATCGAGGTAGTTGTCCCCTTTGCAACCGGTCAATTCTTGAAATCC TCGACATTTTCTAA
AA sequence Show only first row Show all	>Potri.004G003101.2 pacid=42796362 polypeptide=Potri.004G003101.2.p locus=Potri.004G003101 ID=Potri.004G003101.2.v4.1 annot-version=v4.1 MSQLRVLLQEPEREAITILALLGDHMDGVDSSRRRSRRMSLKERLGLRGLGCCGATWGFSPTTIVTNDDLDIDEEREEIEAVVNTGQEEEEEEERVSDPG CLDPNPSPNQQHSSGMNLAAALAAERQFREAGSNIMEPTSVTDVGTANVGLTGTPLRVSLMRLLEESTEGGGGGEGVITETTVGNDTVCCVCMGRKKGAA FIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03965			RING/U-box superfamily protein...		Potri.004G003101 [exp]	0	1
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Potri.006G089600 [exp]	4.69	0.9568	RBE.2
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.018G058800 [exp]	6.00	0.9333
AT5G06490			RING/U-box superfamily protein...		Potri.010G243500 [exp]	6.16	0.9553
AT1G19900			glyoxal oxidase-related protei...		Potri.005G235500 [exp]	6.16	0.9268
AT1G27040			Major facilitator superfamily ...		Potri.014G036200 [exp]	6.24	0.9403
					Potri.007G082600 [exp]	8.77	0.9361
AT4G37420			Domain of unknown function (DU...		Potri.005G252100 [exp]	10.09	0.9275
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.013G131000 [exp]	10.81	0.9133
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Potri.015G063400 [exp]	11.18	0.9363	Pt-ATH2.2
AT3G46280			protein kinase-related (.1)		Potri.013G030866 [exp]	11.66	0.9366

Compare expression of checked genes

Potri.004G003101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.