Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58360 70 / 1e-14 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT4G18830 66 / 3e-13 OFP ATOFP5, OFP5 ovate family protein 5 (.1) AT2G30400 65 / 7e-13 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT5G01840 64 / 7e-13 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT5G19650 63 / 1e-12 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT1G06920 63 / 2e-12 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT3G52525 61 / 5e-12 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G36026 60 / 1e-11 OFP Ovate family protein (.1) AT2G36030 52 / 7e-10 unknown protein AT2G18500 51 / 5e-08 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107700 [exp] 75 / 2e-16 AT1G06920 116 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.016G134200 [exp] 73 / 1e-15 AT1G06920 117 / 1e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.004G062100 [exp] 67 / 2e-13 AT4G18830 104 / 9e-25 ovate family protein 5 (.1) Potri.006G156176 [exp] 66 / 2e-13 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.019G128500 [exp] 64 / 2e-12 AT1G06920 129 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.016G072800 [exp] 62 / 2e-12 AT2G36026 118 / 1e-33 Ovate family protein (.1) Potri.006G205400 [exp] 62 / 2e-12 AT2G36026 115 / 3e-32 Ovate family protein (.1) Potri.007G028000 [exp] 63 / 3e-12 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.002G262500 [exp] 63 / 4e-12 AT5G19650 94 / 2e-22 ovate family protein 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006092 [exp] 72 / 4e-15 AT5G01840 121 / 5e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10025241 [exp] 71 / 5e-15 AT1G06920 112 / 2e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10014164 [exp] 66 / 1e-13 AT1G06920 104 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10011092 [exp] 63 / 5e-12 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10015236 [exp] 62 / 7e-12 AT4G18830 112 / 1e-27 ovate family protein 5 (.1) Lus10043243 [exp] 61 / 1e-11 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10041730 [exp] 59 / 1e-10 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10021302 [exp] 57 / 3e-10 AT3G52525 120 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10008589 [exp] 55 / 3e-09 AT5G01840 120 / 6e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10042224 [exp] 54 / 4e-09 AT5G01840 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [poplar] [flax] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Potri.004G003700.1 pacid=42794435 polypeptide=Potri.004G003700.1.p locus=Potri.004G003700 ID=Potri.004G003700.1.v4.1 annot-version=v4.1 ATGAAAGAATCCAGGGTAGACAAGAAGCAAAAACTTCAGCAAAGAGGATGCAAGGCCTTTTGTTGCAGTTGCAGGCTAAGTGTCTCTTCTTCTGAGGAAG CTGAGAGCTCGAATCCCGATCGGTTTGCATCGATCTCAAGCCTGGCACATGCGATGGTACAAGAGAGACTAGACCAGATGATTAGAGAAAGGCAAGAGGC AAGACAAAGAGAGAGAAGAAGGAGACTAAGAAGTGATGGGACCAAGTTTATAGTAATGGTAGCTATGGAGAAAAGCTCTTACGATCCAAGAGAAGATTTT AGAGAGTCCATGGTTGAGATGATCATGGCAAACCGGCTACAAGAGCCAAAAGATCTCCGTAGTCTGTTGAATTATTACATGTCAATGAACTCTGAAGAGT ATCATGGAATGATACTGGAAGTTTTCCATGAGGTTTGCACCAATCTGTTTTTATGCTGTAAATGCCATTGA
AA sequence Show only first row Show all	>Potri.004G003700.1 pacid=42794435 polypeptide=Potri.004G003700.1.p locus=Potri.004G003700 ID=Potri.004G003700.1.v4.1 annot-version=v4.1 MKESRVDKKQKLQQRGCKAFCCSCRLSVSSSEEAESSNPDRFASISSLAHAMVQERLDQMIRERQEARQRERRRRLRSDGTKFIVMVAMEKSSYDPREDF RESMVEMIMANRLQEPKDLRSLLNYYMSMNSEEYHGMILEVFHEVCTNLFLCCKCH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58360	OFP	ATOFP3, OFP3	ARABIDOPSIS THALIANA OVATE FAM...		Potri.004G003700 [exp]	0	1
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Potri.005G138900 [exp]	9.48	0.5953
AT3G15115			unknown protein		Potri.001G372800 [exp]	14.96	0.6023
AT3G44716			unknown protein		Potri.009G148200 [exp]	15.77	0.6218
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.008G156700 [exp]	16.49	0.5988
AT2G28120			Major facilitator superfamily ...		Potri.001G194500 [exp]	33.67	0.5945
AT3G55550			Concanavalin A-like lectin pro...		Potri.016G101000 [exp]	37.78	0.5873	Pt-LECRK7.1
AT1G72490			unknown protein		Potri.001G166700 [exp]	72.06	0.5412
AT2G12646			PLATZ transcription factor fam...		Potri.018G116000 [exp]	73.53	0.5605
AT4G18950			Integrin-linked protein kinase...		Potri.004G064400 [exp]	76.95	0.5086
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.006G261200 [exp]	78.22	0.5612	PPLZ02.2

Compare expression of checked genes

Potri.004G003700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.