Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12000 946 / 0 Phosphofructokinase family protein (.1) AT4G04040 905 / 0 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G76550 376 / 2e-123 Phosphofructokinase family protein (.1) AT1G20950 374 / 9e-123 Phosphofructokinase family protein (.1) AT5G56630 58 / 9e-09 PFK7 phosphofructokinase 7 (.1) AT4G08876 52 / 1e-08 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related (.1) AT4G26270 56 / 6e-08 PFK3 phosphofructokinase 3 (.1) AT5G47810 56 / 7e-08 PFK2 phosphofructokinase 2 (.1) AT5G61580 49 / 9e-06 PFK4 phosphofructokinase 4 (.1.2) AT4G32840 47 / 2e-05 PFK6 phosphofructokinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G015900 [exp] 1023 / 0 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.006G281900 [exp] 1023 / 0 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.011G015600 [exp] 648 / 0 AT1G12000 637 / 0.0 Phosphofructokinase family protein (.1) Potri.005G257800 [exp] 384 / 1e-126 AT1G76550 1065 / 0.0 Phosphofructokinase family protein (.1) Potri.002G003100 [exp] 370 / 6e-121 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1) Potri.016G002700 [exp] 57 / 3e-08 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.006G152600 [exp] 53 / 3e-07 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.018G069200 [exp] 53 / 4e-07 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 50 / 3e-06 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038700 [exp] 855 / 0 AT1G12000 875 / 0.0 Phosphofructokinase family protein (.1) Lus10037972 [exp] 491 / 3e-170 AT4G04040 498 / 9e-173 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) Lus10016047 [exp] 380 / 8e-125 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1) Lus10025167 [exp] 380 / 1e-124 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1) Lus10005488 [exp] 57 / 2e-08 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10011143 [exp] 56 / 5e-08 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 56 / 5e-08 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10006032 [exp] 56 / 7e-08 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 54 / 2e-07 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10035001 [exp] 54 / 3e-07 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [poplar] [flax] PFK PF00365 [poplar] [flax] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Potri.004G003800.1 pacid=42795953 polypeptide=Potri.004G003800.1.p locus=Potri.004G003800 ID=Potri.004G003800.1.v4.1 annot-version=v4.1 ATGGCTCCTGCTTTTGTAATTAACGGCGACTCCGCTCGGGCCAGCGGTCGCTTTGCTTCTGTTTACAGCGAAGTCCAATCGAGCCGTATCGATCACGCGC TCCCTCTACCTTCTGTCCTAAAAAACCCTTTCAAAATCGTCGACGGCACTCGTAGTTCCGCCGCCGGCAATCCTGATGAGATAGCGAAGCTGTTTCCGAA TCTGTTTGGGCAACCATCGGCAAAGTTGGTGCCAAACGATGTGGACACGTTGAGTTCAGACCAGAAGTTGAAGATCGGTGTGGTTTTGTCCGGTGGACAA GCACCTGGTGGTCATAATGTTATTTCTGGAATCTTCGATTATTTGCAGGATCGGGCGAAAGGAAGTGTATTGTATGGGTTTAAGGGAGGTCCAGCTGGGA TCATGAAGTGCAAATATGTTGAATTGAATGCCGACTATATCTATCCTTATAGAAATCAGGGTGGTTTTGATATGATCTGCAGTGGAAGAGACAAAATTGA AACGCCTGAGCAGTTCAAACAAGCTGAAGAAACAGCAAAGAAACTTGACTTGGATGGGCTTCTTGTTATTGGTGGGGATGACTCAAACACAAATGCTTGC CTCCTTGCTGAAGACTTCTGGGTTAAAGGTTTGAAAACTCGGGTGATGGGATGCCCAAAAACCATTGATGGTGATTTGAAATCCAAGGAGGTTCCTACCA GTTTTGGATTTGATACTGCTTGCAAGATATATTCAGAAATGATTGGAAATGTCATGATTGATGCTAGATCAACTGGAAAATATTATCATTTTGTCCGGCT TATGGGACGTGCAGCTTCACACATTACATTGGAGTGTGCCTTGCAAACTCATCCAAACATCACCATCATTGGAGAAGAGGTTGCTGCAAAGCAGCTGACA CTGAAAAATGTTACAGATTACATAGTTGATATAATCTGTAAACGGTCTGATCTTGGATATAACTATGGCGTGATTCTTGTTCCTGAAGGTTTAATTGATT TCATTCCTGAGGTTCAGTACCTTATAGCGGAACTAAATGAAATTTTGGCACATGATGTGGTAGATGAAGACGGGCTGTGGAAAAAGAAACTTACAAATCA ATCCCTGCAGCTTTTTGAATTTTTGCCACCAGCAATTCAAGAACAATTGATGCTTGAAAGAGATCCACATGGAAATGTCCAGGTTGCCAAAATTGAGACA GAGAAAATGCTTATTCAAATGGTTGAGACTGAGTTGGAGAAGAGGAAGCAGATAGGTCAATCCAATTGCATTTTCAAAGGACAGTCCCACTTCTTCGGGT ATGAAGGAAGATGTGGTTTGCCAACAAACTTTGATGCTACATACTGCTATGCTTTGGGCTATGGTGCTGGAGCTCTCCTTCATAGTGGAAAAACTGGGCT GATATCGTCGGTTGGGAATTTGGGCGCTCCTGTTGCAGAATGGACTGTTGGTGGGACTGCATTGACTTCTTTGATGGACGTAGAGAGGAGACATGGTAAA TTCAAGCCTGTGATCAAGAAGGCAATGGTGGAACTCGAAGGTGGCCCTTTCAAAAAATTTGAATCCCTGAAGAATGAGTGGGCAATCAATAATCGCTACA TTAGTCCTGGTCCCATCCAATTCATAGGCCCAGGATCAGATGCCATTAGTCACACTTTACTACTGGAATTGGGAGCTCATGCTTAG
AA sequence Show only first row Show all	>Potri.004G003800.1 pacid=42795953 polypeptide=Potri.004G003800.1.p locus=Potri.004G003800 ID=Potri.004G003800.1.v4.1 annot-version=v4.1 MAPAFVINGDSARASGRFASVYSEVQSSRIDHALPLPSVLKNPFKIVDGTRSSAAGNPDEIAKLFPNLFGQPSAKLVPNDVDTLSSDQKLKIGVVLSGGQ APGGHNVISGIFDYLQDRAKGSVLYGFKGGPAGIMKCKYVELNADYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLLVIGGDDSNTNAC LLAEDFWVKGLKTRVMGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKQLT LKNVTDYIVDIICKRSDLGYNYGVILVPEGLIDFIPEVQYLIAELNEILAHDVVDEDGLWKKKLTNQSLQLFEFLPPAIQEQLMLERDPHGNVQVAKIET EKMLIQMVETELEKRKQIGQSNCIFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLGAPVAEWTVGGTALTSLMDVERRHGK FKPVIKKAMVELEGGPFKKFESLKNEWAINNRYISPGPIQFIGPGSDAISHTLLLELGAHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12000			Phosphofructokinase family pro...		Potri.004G003800 [exp]	0	1
AT4G23895			Pleckstrin homology (PH) domai...		Potri.001G091100 [exp]	1.00	0.8498
AT1G19310			RING/U-box superfamily protein...		Potri.002G133000 [exp]	11.31	0.7995
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032900 [exp]	12.96	0.7916
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007400 [exp]	19.49	0.8131	Pt-ARF1.7
AT1G32460			unknown protein		Potri.001G145066 [exp]	20.00	0.7929
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Potri.003G122900 [exp]	26.38	0.7855
AT4G00755			F-box family protein (.1.2)		Potri.014G076300 [exp]	26.72	0.7856
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.008G201600 [exp]	27.05	0.8017
AT1G06060			LisH and RanBPM domains contai...		Potri.005G233000 [exp]	29.56	0.7651
AT4G17640		CKB2	casein kinase II beta chain 2...		Potri.003G084900 [exp]	30.39	0.7220

Compare expression of checked genes

Potri.004G003800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.