Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22190 176 / 1e-51 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G282000 [exp] 360 / 1e-123 AT4G22190 206 / 2e-63 unknown protein Potri.006G282500 [exp] 353 / 4e-121 AT4G22190 207 / 9e-64 unknown protein Potri.011G015500 [exp] 346 / 3e-118 AT4G22190 201 / 2e-61 unknown protein Potri.006G283300 [exp] 280 / 1e-93 AT4G22190 184 / 1e-55 unknown protein Potri.006G270100 [exp] 239 / 4e-77 AT4G22190 154 / 8e-44 unknown protein
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G003900.1 pacid=42795270 polypeptide=Potri.004G003900.1.p locus=Potri.004G003900 ID=Potri.004G003900.1.v4.1 annot-version=v4.1 ATGGACAGCCCACAAAGAATATCCATTAAAGAACCTCAAGTAATCCTCTCTCCATGCAGCAGTGCTAGAAGGAGGAGGAGAACAAGCACTTGTTCAAACT CACCCGAATTCGAGTTCTGGATGGTCAGAAACCCATCTTTCCCTCAACCAAATCTTGTTTCTGCTGATGAGCTCTTTGTTGATGGTGTCCTCCTCCCTCT CCACCTCCTCCACCAACCCAACAACAACACTAACAACAGCCACCCTGACCCTGACCCTGACTCACCCGAACCCGAACCACCCAACGCTCAACCTGACCCT GGACCAGAAATTTCACCAGCAAGCATAACCATAGAGCCAACCTCAAGCTCAAAGAGATGGAAAGATATGATATTCAAGAAAGGTGACAAGAAAACTTCAA CAGCAGCCAAGAAACAAGAAGAAAAGGATAAGGACAGAGACAGAGACAAGAAGAGAGAGAAAAGGAGTCAGAGTGGAGCGAGTTCAGCTGAGTTGAATAT CATCAACATATGGCCATTTTCACGCAGTAGATCCGCAGGGAACAGTGTGACCCGACCCAAGTTGTTTCCCGGGGCCCCTGGAACCCGGAAGGTTAGCAGT GCCCCTTGTTCAAGGAGTAATTCAGCAGGGGAATCCAAATCAAGAAAGTCTTGGCCAAGTAGTCCGAGTCGACCCGGTGTCCATGTGGGTCGGAGCAGCC CGGTTTGGCAGGCTCGACGTGGAGGTAGTTCCGGTATGAAGAGTAGTTTCCCCGAAGCCGTGGTTCGGAGTGGTGAAAAATTGAGCAGCAAAAAAGAAGT TACCGAGCCTGGCCGCGGTAAGAACATAGCAAGTGGCAATGGCAGCACTAGAGCAAAGGTTTTGAATATAAATGTTCCCGTGTGTATTGGTTATAGAAAC CATTTGAGCTGTAGAAGTGATGAAAATAGTGCTATCGGTGCCCGCGGCAGCGGCGGTGGCAAAAATGTTGCTGGTGGTAGCACTGATGGTAGTAGTGCTA CCAATAGCACCATAAATGTTGGAAATGGTGGCAATCTTTTCAATTTTCGCAGCCTCTTCTCAAAAAAGGTTTATTAA
AA sequence Show only first row Show all	>Potri.004G003900.1 pacid=42795270 polypeptide=Potri.004G003900.1.p locus=Potri.004G003900 ID=Potri.004G003900.1.v4.1 annot-version=v4.1 MDSPQRISIKEPQVILSPCSSARRRRRTSTCSNSPEFEFWMVRNPSFPQPNLVSADELFVDGVLLPLHLLHQPNNNTNNSHPDPDPDSPEPEPPNAQPDP GPEISPASITIEPTSSSKRWKDMIFKKGDKKTSTAAKKQEEKDKDRDRDKKREKRSQSGASSAELNIINIWPFSRSRSAGNSVTRPKLFPGAPGTRKVSS APCSRSNSAGESKSRKSWPSSPSRPGVHVGRSSPVWQARRGGSSGMKSSFPEAVVRSGEKLSSKKEVTEPGRGKNIASGNGSTRAKVLNINVPVCIGYRN HLSCRSDENSAIGARGSGGGKNVAGGSTDGSSATNSTINVGNGGNLFNFRSLFSKKVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22190			unknown protein		Potri.004G003900 [exp]	0	1
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Potri.008G105500 [exp]	1.73	0.6532
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.004G072000 [exp]	3.74	0.6184
AT5G26720			unknown protein		Potri.005G001100 [exp]	6.16	0.6627
AT1G75590			SAUR-like auxin-responsive pro...		Potri.005G237000 [exp]	13.41	0.6161
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Potri.017G082900 [exp]	13.67	0.6123
AT5G49665			Zinc finger (C3HC4-type RING f...		Potri.002G107902 [exp]	17.02	0.5561
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Potri.003G083700 [exp]	22.97	0.5599
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.005G074700 [exp]	23.13	0.6422	POR.1,TFCFC
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.007G032700 [exp]	28.46	0.6160
AT2G25430			epsin N-terminal homology (ENT...		Potri.018G026900 [exp]	30.19	0.6004

Compare expression of checked genes

Potri.004G003900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.