Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04180 682 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G45000 141 / 1e-36 AAA-type ATPase family protein (.1.2) AT5G43010 139 / 9e-36 RPT4A regulatory particle triple-A ATPase 4A (.1) AT5G58290 138 / 2e-35 RPT3 regulatory particle triple-A ATPase 3 (.1) AT5G53540 134 / 3e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G27680 133 / 9e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G80350 134 / 2e-33 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27600 132 / 3e-33 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT4G28000 133 / 2e-32 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G29040 129 / 4e-32 RPT2A regulatory particle AAA-ATPase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G031400 [exp] 139 / 4e-36 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.009G120500 [exp] 139 / 7e-36 AT1G45000 744 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G158600 [exp] 139 / 8e-36 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G231700 [exp] 139 / 9e-36 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.016G028000 [exp] 138 / 2e-35 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.009G144300 [exp] 137 / 6e-35 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.006G031000 [exp] 136 / 9e-35 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.004G184500 [exp] 135 / 2e-34 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.001G176900 [exp] 136 / 5e-34 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009809 [exp] 664 / 0 AT4G04180 565 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040913 [exp] 635 / 0 AT4G04180 530 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017972 [exp] 141 / 2e-36 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Lus10028807 [exp] 141 / 2e-36 AT1G45000 748 / 0.0 AAA-type ATPase family protein (.1.2) Lus10017475 [exp] 140 / 3e-36 AT1G45000 759 / 0.0 AAA-type ATPase family protein (.1.2) Lus10004891 [exp] 137 / 6e-35 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10020589 [exp] 137 / 2e-34 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10041964 [exp] 135 / 2e-34 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Lus10008835 [exp] 134 / 3e-34 AT4G27680 649 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022361 [exp] 135 / 4e-34 AT4G27680 632 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily)
Representative CDS sequence Show only first row Show all	>Potri.004G004000.1 pacid=42794398 polypeptide=Potri.004G004000.1.p locus=Potri.004G004000 ID=Potri.004G004000.1.v4.1 annot-version=v4.1 ATGGCGGTGTTCAGTCGATTTGCGAGAGCAACTAGGTCATGGCGAACAATCCCCTCCTCCTCTCTTAGAACCCTAAACCCTTCACGTGCCACCTCATGTG ACCTTCCTCCTCCCACCCCCCTCTTTCTCCGTTCTTTTAATCACCAAATTCATTCAAGTTCATCAGAAATTCTACGGCCCAGATGGGCTTCTAATGCTAA TGAGCTGCCGAACTCTTTATTTCCAGCATTACTAGCTAGTTTCATTGGAGTTGGAATGTTACAAGTAGCCCATGCAGATTCTGATGAGAATGCTAGTAAA CCTCCTTTGCCATCAGAATCTTCTCCTTCGAGTTACGGTGACTTGGAGGAGATTGCTAAGAAAGAACGGCAGCGAATTGAAGAGTTGCTTAAAAGCAAAG GAATCAAATATGGGTCTTTTCCTCGCTTCACTATTGCTGTGAAGGGCCAAAAGGTTACAATCAAGTTCCAAATTCCACCTGCATGTGATACGCCACAGTT GATTGCAAACCTTGTTTCTAATCTTGGAGTGAAGGTCGATGAGCGTGGTGCTGGTTCAGATATGTCATTACGTGCTTGGGACAGTGCAGTTGCCTGGCAA TTAACACTTAATTATCCAGAGAAACAGAAGGAAATCAGTGGGGAAAGGGGGCATTCAGGAGATATGAAAGTGCCCGAGGGAGATCTATGCATCCTCTTAT TTCGTTCACTCATAAGTTCAGATAAACCTGAAGTTGAGTTTATAAAGAGTGGGAGCTTGAGCACCACAGAGCTTGATGCTTTTGTGTCTGTTTTACAATT AGCTGGTAGTAAATTAAGGCCCCTGGACAGAAAACCGGCGGAAGGTTCTGCACGGGTGCCATCTGCGGACAAATCAGTTGCCAGTTTAGAGTCCATGGGA GTAAGAATATATGGACTTGATGAACCCCTTGTGAATTCTTCTAGCAATGATATATCATGGGAAAATATTGCTGGATATGATCAGCAAAAAAGAGAGATAG AAGACACAATCTTATTGGCTCTTCAAAGTCCTGAAGTATATGATGATATTGCTCGTGGGACTCGGCGCAAGTTTGAGTCAAATAGACCTCGAGCTGTGCT TTTTGAAGGTCCACCAGGTACAGGGAAGACATCTTGTGCACGTGTCATTGCTACTCAAGCGGGTGTCCCATTGCTGTATTTACCACTGGAGGTTGTCATG TCAAAATACTATGGAGAAAGTGAACGCTTGCTGGGAAAAGTTTTCACACTTGCAAATGAGATCCCTAATGGTGCTATTATATTTCTAGACGAGGTTGATT CATTTGCTGCTGCTCGAGACAGTGAAATGCATGAAGCCACTCGTAGAATCTTGTCAGTTCTGTTGCGACAGATTGATGGATTTGAACAGGATAAGAAAGT GGTAGTAATTGCCGCGACAAATAGAAAACAAGACCTTGACCCTGCTTTAATCAGTCGGTTTGATTCAATGATTACCTTTGGCCTACCTGATCGGCAGAAT CGACAGGAAATAGCTGCCCAGTATGCGAAGCACCTAACAGAATCTGAGTTGGAGGAATTTGCTAGAGTAACAGAGGACATGTCTGGAAGAGACATTAGAG ATGTGTGTCAACAGGCAGAACGGTCATGGGCATCGAAGATAATTCGAGGACAAGCGAGTAAAGATGGAGGACAAGGAAATCTTCCACCTCTGGCAGAATA CACTGAGAGCGCCATGAATAGAAGGAAGGCTCTAGCTAGTATTGCAGAACAGAAAAGCCAAGGTTCTATCATGCGCCCACAGAAACCTCAATTGGATACA TGTTAG
AA sequence Show only first row Show all	>Potri.004G004000.1 pacid=42794398 polypeptide=Potri.004G004000.1.p locus=Potri.004G004000 ID=Potri.004G004000.1.v4.1 annot-version=v4.1 MAVFSRFARATRSWRTIPSSSLRTLNPSRATSCDLPPPTPLFLRSFNHQIHSSSSEILRPRWASNANELPNSLFPALLASFIGVGMLQVAHADSDENASK PPLPSESSPSSYGDLEEIAKKERQRIEELLKSKGIKYGSFPRFTIAVKGQKVTIKFQIPPACDTPQLIANLVSNLGVKVDERGAGSDMSLRAWDSAVAWQ LTLNYPEKQKEISGERGHSGDMKVPEGDLCILLFRSLISSDKPEVEFIKSGSLSTTELDAFVSVLQLAGSKLRPLDRKPAEGSARVPSADKSVASLESMG VRIYGLDEPLVNSSSNDISWENIAGYDQQKREIEDTILLALQSPEVYDDIARGTRRKFESNRPRAVLFEGPPGTGKTSCARVIATQAGVPLLYLPLEVVM SKYYGESERLLGKVFTLANEIPNGAIIFLDEVDSFAAARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDRQN RQEIAAQYAKHLTESELEEFARVTEDMSGRDIRDVCQQAERSWASKIIRGQASKDGGQGNLPPLAEYTESAMNRRKALASIAEQKSQGSIMRPQKPQLDT C

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04180			P-loop containing nucleoside t...		Potri.004G004000 [exp]	0	1
AT3G46460		UBC13	ubiquitin-conjugating enzyme 1...		Potri.010G206766 [exp]	1.00	0.6100
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Potri.006G230300 [exp]	24.26	0.5692	HDA910
AT1G19340			Methyltransferase MT-A70 famil...		Potri.014G041400 [exp]	43.16	0.5610
AT3G61960			Protein kinase superfamily pro...		Potri.002G181000 [exp]	43.74	0.5523
					Potri.001G149001 [exp]	65.96	0.5522
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Potri.013G032100 [exp]	68.23	0.5570
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Potri.003G183600 [exp]	77.13	0.5276
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Potri.012G075100 [exp]	97.26	0.5362	Pt-PI3.1
AT4G39870			TLD-domain containing nucleola...		Potri.007G092700 [exp]	140.00	0.5075
AT1G35470			SPla/RYanodine receptor (SPRY)...		Potri.019G080800 [exp]	212.45	0.4845

Compare expression of checked genes

Potri.004G004000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.