Plant FIBer expression Database

Potri.004G004100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G22160 78 / 1e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G011400
[exp]
197 / 2e-65 AT4G22160 77 / 1e-18 unknown protein
Potri.006G270200
[exp]
197 / 2e-65 AT4G22160 77 / 1e-18 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G004100.1 pacid=42795495 polypeptide=Potri.004G004100.1.p locus=Potri.004G004100 ID=Potri.004G004100.1.v4.1 annot-version=v4.1
ATGGCAGACGCAGCCGATCGAACCAGACAGAACAGGGCCGAGGAGAACCGCTTAAAGCATGCTTGCGACGCTGGAATGGTGTCTGGTGAAATCCCTTCAG
ACAGTGAGGATTCTAATAATCCACCGAGTTCTGACTCTGTAAGCTCCGTGTCACCACCAAGACTTGCTGATCTTGCAGCGAACTTCCGAGTCTTTTCTGA
GACAATGGCAAGGATGGACCTTGCGGAGATGGAGATGATCAAGGCAAGAGAGGCTTCAAGGTTGGAGGCAGAGAAGAGGAGGATGGAGTTGGAGGCTGAG
TTGACTCGAATGATGCTGCAGACTCGGTTGCGGATTGCTTCGATTGTGGCAGGGAAAGGAATGGGAAGCAAGAGGAAACGAGCTGGTGAAGAAGACGAGG
AGATGCCCATCTCGTCAAGGGAAGGAGCTTTGCTACTAAATTTGCTACAATGCAACAACTTCTTTTGA
AA sequence
>Potri.004G004100.1 pacid=42795495 polypeptide=Potri.004G004100.1.p locus=Potri.004G004100 ID=Potri.004G004100.1.v4.1 annot-version=v4.1
MADAADRTRQNRAEENRLKHACDAGMVSGEIPSDSEDSNNPPSSDSVSSVSPPRLADLAANFRVFSETMARMDLAEMEMIKAREASRLEAEKRRMELEAE
LTRMMLQTRLRIASIVAGKGMGSKRKRAGEEDEEMPISSREGALLLNLLQCNNFF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G22160 unknown protein Potri.004G004100
[exp]
0 1
AT2G41130 bHLH bHLH106 basic helix-loop-helix (bHLH) ... Potri.006G037100
[exp]
1.00 0.8799
AT5G54680 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic ... Potri.011G031000
[exp]
1.41 0.8781
AT5G47760 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase... Potri.016G004200
[exp]
3.00 0.8669
AT3G14130 Aldolase-type TIM barrel famil... Potri.003G069600
[exp]
4.58 0.8042
AT3G47180 RING/U-box superfamily protein... Potri.002G080900
[exp]
9.16 0.8616
Potri.008G023250
[exp]
10.58 0.8068
AT3G17880 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, AR... Potri.015G036000
[exp]
11.48 0.8002 ATTDX.2
AT5G64816 unknown protein Potri.002G105400
[exp]
11.66 0.8258
AT4G33580 ATBCA5 A. THALIANA BETA CARBONIC ANHY... Potri.017G044700
[exp]
11.91 0.7657
AT1G69010 bHLH bHLH102, BIM2 BES1-interacting Myc-like prot... Potri.004G112900
[exp]
12.72 0.7759

Potri.004G004100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.