Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22150 404 / 2e-141 PUX3 plant UBX domain-containing protein 3 (.1) AT4G04210 394 / 9e-139 PUX4 plant UBX domain containing protein 4 (.1) AT4G15410 299 / 8e-100 PUX5, ATB' GAMMA, ATB'GAMMA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) AT3G21660 134 / 5e-36 UBX domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G011300 [exp] 526 / 0 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1) Potri.006G270300 [exp] 526 / 0 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1) Potri.011G005000 [exp] 421 / 4e-150 AT4G04210 358 / 3e-125 plant UBX domain containing protein 4 (.1) Potri.002G225800 [exp] 335 / 1e-113 AT4G15410 362 / 2e-122 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Potri.014G157200 [exp] 304 / 6e-102 AT4G04210 329 / 1e-111 plant UBX domain containing protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035318 [exp] 312 / 3e-104 AT4G15410 414 / 3e-142 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10030005 [exp] 311 / 8e-104 AT4G15410 407 / 6e-140 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10031535 [exp] 308 / 4e-103 AT4G15410 353 / 2e-119 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10015145 [exp] 0 / 1 AT4G15410 184 / 1e-81 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00789 [poplar] [flax] UBX UBX domain CL0072 [poplar] [flax] PF08059 [poplar] [flax] SEP SEP domain
Representative CDS sequence Show only first row Show all	>Potri.004G004200.2 pacid=42794483 polypeptide=Potri.004G004200.2.p locus=Potri.004G004200 ID=Potri.004G004200.2.v4.1 annot-version=v4.1 ATGGCTTCAAGGAACAAGAAACCAGCAAAACCCTCAAGCAGTAGAGCAGGCGGTATCCGTACTCTCTCCGATCTGAACCGGCGGTCTGGACTTGACTCTG ACAGCGATGATGAGGATGCTCCTCAAGAGTACTACACTGGTGGCGAGAAAAGTGGTATGCTCGTCCAAGATCCTACAAAAGGTAATGATGTGGATGCGAT TTTCAATCAAGCTAGACAACTTGGAGCCGTTGAAGGTCCTCTGGAGAATCTTAATCAATCTTCAAGCTCAAGAAGCTTTACTGGAACTGGTAGATTACTA TCGGGGGAGACTGTACCATCTGCTCCTCAACAACCTGAGGCTGTCGTTCACAATATTGTTTTCTGGACCAATGGTTTCACTGTAGACGATGGCCCCTTGA GGAGGCTTGACGATCCCGAAAATGCATCTTTCTTAGAGAGCATCAGGAAGTCTGAGTGTCCGAAGGAGCTTGAACCCTCAGATAGAAGGTCCTCAGTTCA TGTCAATTTGATTAGGAGGGACCAAAAGTGCCCGGAACCAGAGAAGCAGCGCCATGCTGCATTCCAAGGTATAGGGAGGACTCTAGGAAGCAGCAGTGCT TCACCTGCATCTGAACCACCAGCTGATTCTGCTCCTCTGAGCTCTGCTCCAGCCCCTTTAATGGGCCTGGTTGTGGATGAAACGCTGCCATCGACTTCAA TTCAGCTTAGGTTGGCTGATGGGACCCGCATGGTGGCCCACTTTAATAATAGCAACACAGTCAATGACATTCGATCCTTCATTGATGCATCCAGGCCTGG GGGTGCTCGGAATTATCAGCTGCAGTTGATGGGGTTCCCTCCGAAGCTTCTTACTGAGCCAACTCAGACAATAGAGCAGGCAGGCCTTTCCAATTCAGTT GTTATTCAGAAATTCTAG
AA sequence Show only first row Show all	>Potri.004G004200.2 pacid=42794483 polypeptide=Potri.004G004200.2.p locus=Potri.004G004200 ID=Potri.004G004200.2.v4.1 annot-version=v4.1 MASRNKKPAKPSSSRAGGIRTLSDLNRRSGLDSDSDDEDAPQEYYTGGEKSGMLVQDPTKGNDVDAIFNQARQLGAVEGPLENLNQSSSSRSFTGTGRLL SGETVPSAPQQPEAVVHNIVFWTNGFTVDDGPLRRLDDPENASFLESIRKSECPKELEPSDRRSSVHVNLIRRDQKCPEPEKQRHAAFQGIGRTLGSSSA SPASEPPADSAPLSSAPAPLMGLVVDETLPSTSIQLRLADGTRMVAHFNNSNTVNDIRSFIDASRPGGARNYQLQLMGFPPKLLTEPTQTIEQAGLSNSV VIQKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22150		PUX3	plant UBX domain-containing pr...		Potri.004G004200 [exp]	0	1
AT4G26840		ATSUMO1, SUMO1,...	ARABIDOPSIS THALIANA SMALL UBI...		Potri.002G224700 [exp]	5.47	0.7850	Pt-SUM1.1
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.017G059000 [exp]	7.34	0.7812
AT2G38550			Transmembrane proteins 14C (.1...		Potri.016G137200 [exp]	9.48	0.7609
AT4G17760			damaged DNA binding;exodeoxyri...		Potri.001G139100 [exp]	9.48	0.8031
AT2G35605			SWIB/MDM2 domain superfamily p...		Potri.013G070600 [exp]	11.48	0.7510
AT1G47820			unknown protein		Potri.014G121300 [exp]	13.03	0.7565
AT5G60390			GTP binding Elongation factor ...		Potri.010G218800 [exp]	13.85	0.7585
AT1G80670		RAE1	RNA export factor 1, Transduci...		Potri.001G048100 [exp]	14.49	0.7607
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.002G242100 [exp]	14.49	0.7208
AT5G11810			unknown protein		Potri.006G230000 [exp]	20.49	0.6957

Compare expression of checked genes

Potri.004G004200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.