Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	STM.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62360 386 / 2e-133 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT4G08150 266 / 5e-86 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G23380 239 / 9e-77 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT1G70510 226 / 7e-72 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT5G25220 126 / 2e-32 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT4G32040 115 / 6e-29 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT5G11060 115 / 1e-28 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT1G62990 105 / 1e-25 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT1G14760 64 / 3e-12 KNATM KNOX Arabidopsis thaliana meinox (.1.2.3) AT1G75430 62 / 1e-10 HD BLH11 BEL1-like homeodomain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G011101 [exp] 572 / 0 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.006G270401 [exp] 565 / 0 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.002G113300 [exp] 261 / 1e-84 AT4G08150 421 / 7e-147 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Potri.008G188700 [exp] 233 / 4e-74 AT1G23380 390 / 1e-136 KNOTTED1-like homeobox gene 6 (.1.2) Potri.012G087100 [exp] 231 / 4e-73 AT1G23380 323 / 1e-109 KNOTTED1-like homeobox gene 6 (.1.2) Potri.010G043500 [exp] 224 / 6e-71 AT1G23380 371 / 3e-129 KNOTTED1-like homeobox gene 6 (.1.2) Potri.015G079100 [exp] 224 / 3e-70 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 219 / 6e-69 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.005G014200 [exp] 219 / 6e-69 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030003 [exp] 309 / 5e-103 AT1G62360 315 / 5e-105 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Lus10013037 [exp] 228 / 3e-72 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10029125 [exp] 228 / 5e-72 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10028244 [exp] 221 / 2e-69 AT4G08150 370 / 1e-127 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10001238 [exp] 177 / 4e-52 AT1G23380 250 / 1e-80 KNOTTED1-like homeobox gene 6 (.1.2) Lus10007245 [exp] 160 / 5e-48 AT4G08150 250 / 3e-83 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10042102 [exp] 112 / 7e-30 AT1G23380 155 / 3e-47 KNOTTED1-like homeobox gene 6 (.1.2) Lus10001934 [exp] 114 / 4e-28 AT5G25220 435 / 9e-152 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001941 [exp] 109 / 2e-26 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2) Lus10006291 [exp] 107 / 1e-25 AT5G25220 489 / 3e-172 KNOTTED1-like homeobox gene 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03789 [poplar] [flax] ELK ELK domain PF03790 [poplar] [flax] KNOX1 KNOX1 domain PF03791 [poplar] [flax] KNOX2 KNOX2 domain CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain
Representative CDS sequence Show only first row Show all	>Potri.004G004700.1 pacid=42795132 polypeptide=Potri.004G004700.1.p locus=Potri.004G004700 ID=Potri.004G004700.1.v4.1 annot-version=v4.1 ATGGAGGGAGGTGGTGCTGGTTGTTCAAGTACCCCTTCACTTATGATGGCTTTTGGAGACAGCAGTAATGGACTATGCCCTATGATGATGATGCCGCTAA TGTCTTCTTCATCTTCTGCTCATCAGCATCACCATCAGCAACAACATGTTAATGCGGGGGATTCATCAATATCAAATACCTTATTCCTTCCTCTACCTCC TACCAACTATCAAAGTCAAAACCGTATTAATAATAGCGCTAGTGGCTCTTCTATGATTCTTGACGATCACAACCACAACAACAACACTGTCACTGCGACT GGGTGTTATTTCATGGAGAACAATGATGGTGGTAGTAATTCTACTTCTGTAAAGGCTAAAATTATGGCTCATCCTCACTACCATCGGCTCTTGGCTGCCT ATGCCAATTGTCAAAAGGTTGGAGCACCACCTGAAGTCGTGGCTAGACTTGAAGAAGCTTGTGCATCTGCTGCCTCAATGGGCCCTGCAAATACAGACGG CATCGGTGAAGATCCAGCCCTTGACCAATTCATGGAGGCCTACTGTGAGATGCTGACCAAGTATGAGCAAGAACTCTCTAAGCCCTTGAAGGAAGCCATG GTTTTTCTTCAGAGGGTCGAATGCCAATTCAGAGCCCTCACTCTTTCCTCTCCAAATTCTGCTTGGGGCGAGGGCAATGATAGGAATGCATCATCCGAAG AGGAGCTTGATGTGAATAACAAATTCATAGATCCTCAAGCAGAAGATCAAGAATTGAAAGGTCAGCTACTACGCAAGTACAGTGGATATTTAGGCAGTCT CAAGAAGGAGTTCATGAAAAAGAGAAAGAAAGGGAAGTTGCCCAAAGAAGCGAGGCAGCAGCTGCTGGATTGGTGGAGCAGGCATCACAAATGGCCATAT CCATCGGAGTCACAGAAGCTGGCCCTCGCAGAGTCCACTGGTCTGGATCAGAAGCAGATAAACAACTGGTTCATTAACCAAAGGAAACGCCACTGGAAAC CATCAGAAGACATGCAGTTTGTGGTGATGGATGCCGGCCATCCTCATTATTACATGGATAATGTTTTGGGCAATCCTTTCCCAATGGACATCTCTCACAC ACTGCTTTGA
AA sequence Show only first row Show all	>Potri.004G004700.1 pacid=42795132 polypeptide=Potri.004G004700.1.p locus=Potri.004G004700 ID=Potri.004G004700.1.v4.1 annot-version=v4.1 MEGGGAGCSSTPSLMMAFGDSSNGLCPMMMMPLMSSSSSAHQHHHQQQHVNAGDSSISNTLFLPLPPTNYQSQNRINNSASGSSMILDDHNHNNNTVTAT GCYFMENNDGGSNSTSVKAKIMAHPHYHRLLAAYANCQKVGAPPEVVARLEEACASAASMGPANTDGIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAM VFLQRVECQFRALTLSSPNSAWGEGNDRNASSEEELDVNNKFIDPQAEDQELKGQLLRKYSGYLGSLKKEFMKKRKKGKLPKEARQQLLDWWSRHHKWPY PSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAGHPHYYMDNVLGNPFPMDISHTLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.004G004700 [exp]	0	1	STM.2
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.011G011101 [exp]	2.00	0.8175
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.006G270401 [exp]	3.87	0.8103
AT3G01840			Protein kinase superfamily pro...		Potri.001G332800 [exp]	4.89	0.6756
AT5G59790			Domain of unknown function (DU...		Potri.010G209600 [exp]	8.77	0.6764
AT3G60670			PLATZ transcription factor fam...		Potri.002G144900 [exp]	10.58	0.7285
AT2G41550			Rho termination factor (.1)		Potri.006G046700 [exp]	11.66	0.7075
AT5G05790	MYB		Duplicated homeodomain-like su...		Potri.008G064200 [exp]	12.96	0.6344
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.004G143700 [exp]	13.78	0.6773
AT3G60830		ATARP7	actin-related protein 7 (.1)		Potri.001G265200 [exp]	23.32	0.6054	ARP7.1,ARP903
AT3G23290		LSH4	LIGHT SENSITIVE HYPOCOTYLS 4, ...		Potri.008G167700 [exp]	30.29	0.5694

Compare expression of checked genes

Potri.004G004700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.