Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20060 465 / 9e-167 Ribosomal protein L4/L1 family (.1) AT1G07320 89 / 2e-20 EMB2784, RPL4 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G270501 [exp] 137 / 5e-41 AT2G20060 131 / 3e-39 Ribosomal protein L4/L1 family (.1) Potri.006G221100 [exp] 100 / 2e-24 AT1G07320 343 / 4e-119 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005427 [exp] 396 / 5e-140 AT2G20060 390 / 3e-138 Ribosomal protein L4/L1 family (.1) Lus10018212 [exp] 112 / 6e-29 AT1G07320 332 / 8e-115 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4) Lus10040693 [exp] 114 / 8e-29 AT1G07320 334 / 2e-114 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00573 [poplar] [flax] Ribosomal_L4 Ribosomal protein L4/L1 family
Representative CDS sequence Show only first row Show all	>Potri.004G004800.1 pacid=42796009 polypeptide=Potri.004G004800.1.p locus=Potri.004G004800 ID=Potri.004G004800.1.v4.1 annot-version=v4.1 ATGGCTTTGTCGATTTCGAGAAGGGTTTTGCGTTCTTTTGGGTCCTTGTCTGGGTTTGGTCGCTGTGGTGATTCTTCTAGTCTTACCAGGCAGTCATTTC GAGCTTCTCATGATTTGTATGGACACGTTTCTGGGGATTGCTTATTTTCTGCAGAATCCTCTAGCTTTATCAAGGGTGCAGTATCTTCCCTTGCTCACCG GAGGCTTTCGACATCCAATGTGACTTCTGAATCTACTGATGGATCATTTCCTTCTGATTTATTATCTGCAAAGAATGTGGTAACACCACAACGTGAGATA GGACTTTATCAGGACCTGGTAATTCCAGTGACAAATTTTCACAATGAGGACAAGGGTTTAATGGTTTTGGCTGGTGATGTTTTTGATGTCCCTATCAGGA AGGATATTATTCACCGTGTTGTGCGATGGCAGCTTGCAAAACGACAACAGGGAACACATTCAACAAAAACAATCAGTGAGGTTAGTGGGACCGGCAGAAA GCCATATAGACAAAAGGGCACTGGCCGAGCAAGACATGGAACGTTGCGTGGACCCCAGTTTAGAGGTGGTGCTGTTATGCATGGCCCTAAACCACGAAGT CATGCTTTTAAATTAAACAAGAAGGTGAGGCGTTTGGGACTGAAGATTGCTTTGACAGCTCGTGCAGCAGAAGGAAAGCTTCTGGTTTTTGAGGATTTGG AGGTGCCTACGCATAAAACCAAGAATATTGTGAACTATGTCATTGAAATGGAGAACACCAAGAAATTACTGGTGGTGGATGGTGGCCCCATTAATGAGAA GCTGAAGTTAGCAACACAGAATCTACATTATGTAAACTTACTACCGTCGATTGGTCTAAATGTGTATAGCATCCTGCAGCACGATACCTTGGTGATGTCC CGTGATGCCGTAAACAAAATTGTTGAGCGGATGCACACTCCAATCAAACGATGA
AA sequence Show only first row Show all	>Potri.004G004800.1 pacid=42796009 polypeptide=Potri.004G004800.1.p locus=Potri.004G004800 ID=Potri.004G004800.1.v4.1 annot-version=v4.1 MALSISRRVLRSFGSLSGFGRCGDSSSLTRQSFRASHDLYGHVSGDCLFSAESSSFIKGAVSSLAHRRLSTSNVTSESTDGSFPSDLLSAKNVVTPQREI GLYQDLVIPVTNFHNEDKGLMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYRQKGTGRARHGTLRGPQFRGGAVMHGPKPRS HAFKLNKKVRRLGLKIALTARAAEGKLLVFEDLEVPTHKTKNIVNYVIEMENTKKLLVVDGGPINEKLKLATQNLHYVNLLPSIGLNVYSILQHDTLVMS RDAVNKIVERMHTPIKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20060			Ribosomal protein L4/L1 family...		Potri.004G004800 [exp]	0	1
AT2G18400			ribosomal protein L6 family pr...		Potri.007G024900 [exp]	2.00	0.8441
AT1G29250			Alba DNA/RNA-binding protein (...		Potri.018G029300 [exp]	3.46	0.8037
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Potri.002G140700 [exp]	4.47	0.7636
AT3G06040			Ribosomal protein L12/ ATP-dep...		Potri.015G077200 [exp]	6.48	0.7932
AT3G13230			RNA-binding KH domain-containi...		Potri.011G166000 [exp]	7.48	0.7896
AT4G02930			GTP binding Elongation factor ...		Potri.002G215900 [exp]	8.12	0.8077	Pt-TUFA.3
AT2G44860			Ribosomal protein L24e family ...		Potri.009G148500 [exp]	9.21	0.7973
AT1G15870			Mitochondrial glycoprotein fam...		Potri.001G047600 [exp]	9.38	0.7987
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Potri.002G142700 [exp]	9.48	0.7138	BSTCP.2
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.004G133800 [exp]	11.74	0.7595

Compare expression of checked genes

Potri.004G004800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.