Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22140 409 / 2e-147 EBS EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G39100 279 / 8e-96 SHL1 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G04260 271 / 2e-93 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G14700 54 / 2e-08 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT4G23120 51 / 2e-07 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G12620 50 / 4e-07 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT3G43990 49 / 6e-07 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G11560 49 / 1e-06 bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G25120 45 / 3e-05 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G48050 45 / 3e-05 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G270601 [exp] 455 / 2e-165 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.011G010901 [exp] 440 / 3e-159 AT4G22140 401 / 1e-143 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.014G157100 [exp] 383 / 5e-137 AT4G22140 385 / 7e-138 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.002G226000 [exp] 377 / 2e-134 AT4G22140 379 / 2e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.004G159900 [exp] 316 / 1e-110 AT4G39100 323 / 2e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.009G121000 [exp] 306 / 9e-107 AT4G39100 318 / 2e-111 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.003G127400 [exp] 57 / 2e-09 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.001G104300 [exp] 55 / 1e-08 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.009G054300 [exp] 47 / 5e-06 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015543 [exp] 386 / 6e-138 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10020020 [exp] 385 / 2e-137 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10017482 [exp] 302 / 5e-105 AT4G39100 326 / 2e-114 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10028801 [exp] 293 / 2e-101 AT4G39100 324 / 1e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10041960 [exp] 274 / 6e-94 AT4G39100 291 / 7e-101 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10017968 [exp] 213 / 6e-67 AT1G28560 334 / 1e-111 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2) Lus10042137 [exp] 52 / 2e-07 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Lus10008492 [exp] 52 / 2e-07 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008527 [exp] 52 / 2e-07 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10033410 [exp] 52 / 2e-07 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF01426 [poplar] [flax] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Potri.004G004900.1 pacid=42795469 polypeptide=Potri.004G004900.1.p locus=Potri.004G004900 ID=Potri.004G004900.1.v4.1 annot-version=v4.1 ATGGCTAAAACCAGACCAGGAGGCCTCATCTCCAAGCCTAAAACAGGCAAGAGGGACCTTGACTCCTACACAATTCGCGGCACTACCAAAGTTGTCAGAG TGGGGGATTGTGTAATGATGAGACCATCTGATACTGGTAGGCCTTCATACGTGGCAAGAATTGAGGGGATGGAGGCTGACAGTAGAAACAATGTGAAGGT TAGAGTGAGATGGTACTATAGGCCAGAAGAGTCTTTAGGAGGGCGCAGGCAGTTTCATGGAGCGAAAGAGTTGTTCTTATCAGATCATTATGATGTGCAA AGTGCTCACACTATTGAAGGGAAGTGTATAGTTCACTCTTTTAAGAACTATACCAAGCTTGAAAATGTTGGAGCTGAGGATTATTATTGTAGGTTTGAGT ATAAGGCTGCTACTGGAGGTTTCACACCGGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCATATAACCCAGATGATCTTATGGTGCAATGTGAGGG TTGCAAGGACTGGTATCATCCTGCTTGTGTGGACATGACAATTGAAGAGGCAAAAAAATTGGATCACTTTGTGTGTTCTGAATGTGCATCTGATGATGAT GTCAAAAGATCACAAAATGGGTTTTCAGTGTCATCAGTTACTGATGTCAAGGTAGAAAACAAGCGCCGGAAGAGATGA
AA sequence Show only first row Show all	>Potri.004G004900.1 pacid=42795469 polypeptide=Potri.004G004900.1.p locus=Potri.004G004900 ID=Potri.004G004900.1.v4.1 annot-version=v4.1 MAKTRPGGLISKPKTGKRDLDSYTIRGTTKVVRVGDCVMMRPSDTGRPSYVARIEGMEADSRNNVKVRVRWYYRPEESLGGRRQFHGAKELFLSDHYDVQ SAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVDMTIEEAKKLDHFVCSECASDDD VKRSQNGFSVSSVTDVKVENKRRKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.004G004900 [exp]	0	1
AT4G24210		SLY1	SLEEPY1, F-box family protein ...		Potri.002G122300 [exp]	1.00	0.6743
AT3G53850			Uncharacterised protein family...		Potri.006G090400 [exp]	8.83	0.6643
AT5G60340			P-loop containing nucleoside t...		Potri.006G228500 [exp]	12.12	0.6462
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.005G105700 [exp]	23.49	0.6068
AT4G15780		ATVAMP724	vesicle-associated membrane pr...		Potri.008G209100 [exp]	25.45	0.5782
AT1G72880			Survival protein SurE-like pho...		Potri.003G041000 [exp]	27.92	0.6188
AT1G16080			unknown protein		Potri.001G040100 [exp]	36.08	0.5560
AT5G38890			Nucleic acid-binding, OB-fold-...		Potri.013G050400 [exp]	36.85	0.6130
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Potri.001G311600 [exp]	37.14	0.5950
AT5G05800			unknown protein		Potri.004G135901 [exp]	41.49	0.5942

Compare expression of checked genes

Potri.004G004900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.