Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62330 709 / 0 O-fucosyltransferase family protein (.1) AT1G11990 658 / 0 O-fucosyltransferase family protein (.1) AT1G29200 514 / 3e-177 O-fucosyltransferase family protein (.1.2.3) AT4G38390 285 / 5e-89 RHS17 root hair specific 17 (.1) AT2G01480 272 / 9e-84 O-fucosyltransferase family protein (.1) AT3G26370 271 / 3e-83 O-fucosyltransferase family protein (.1) AT5G65470 265 / 1e-81 O-fucosyltransferase family protein (.1) AT4G24530 262 / 2e-80 O-fucosyltransferase family protein (.1) AT1G14970 262 / 8e-80 O-fucosyltransferase family protein (.1) AT1G20550 256 / 1e-77 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G010600 [exp] 986 / 0 AT1G62330 714 / 0.0 O-fucosyltransferase family protein (.1) Potri.011G068300 [exp] 566 / 0 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.004G058900 [exp] 557 / 0 AT1G29200 687 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.001G157400 [exp] 284 / 2e-88 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 275 / 2e-85 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 276 / 4e-85 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 274 / 1e-84 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 270 / 2e-83 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 268 / 2e-82 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015558 [exp] 736 / 0 AT1G62330 733 / 0.0 O-fucosyltransferase family protein (.1) Lus10029239 [exp] 538 / 0 AT1G29200 698 / 0.0 O-fucosyltransferase family protein (.1.2.3) Lus10007290 [exp] 524 / 0 AT1G29200 699 / 0.0 O-fucosyltransferase family protein (.1.2.3) Lus10004729 [exp] 278 / 6e-86 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 275 / 4e-85 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 274 / 1e-84 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10007792 [exp] 265 / 8e-81 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10036875 [exp] 274 / 3e-80 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10012732 [exp] 258 / 4e-79 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10002653 [exp] 258 / 9e-79 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.004G005100.2 pacid=42796055 polypeptide=Potri.004G005100.2.p locus=Potri.004G005100 ID=Potri.004G005100.2.v4.1 annot-version=v4.1 ATGTCCCCATCAGCTGACCTCTCCAATCAACACTCATTACCGACTCATTCTCCTCGACTCGAGCAAAAGAAATGGAAGAGAAAAAGAGAGAGAGGGAAGG TTGTTTGGTATCGAAAGAAGCAATTCAAAGGAATTCTGGGTTTGGTTTGTTTGGTGGGTTTGTTTTTTATTTTTAATGGCTTCATGCTTTTAAGGCTTCA ACTTGATGATGAAACCAGTGGCAACAAAGACATGTCTGTTCAAAATTCTCCTTCAATTTCAGTTTCAATCAAGGATGGATTGAAAAAGATTGGCAAAGGA AAAATGCCACGAAAGGATACTTATGATAGGATGTTGGCTTTGGCTGCCCATTCCCTTGCTAAGAATAAACAGGAGCCAAAAGATTTGTGGCAGGAGCCAT TTGTTCCTGCCTCTGCTTGGAGACCTTGCGCTGATCATCGTGATTGGAATCCTAGTGAGGGAAATAATGGTTACATTTTGGTCACTGCAAATGGGGGGAT GAACCAGCAAAGAGTAGCTGTTTGCAATGCTGTGGTTCTTGCACGGTTGCTGAATTCATCCCTTGTTATTCCCAGATTTATGTACAGCAGCGTCTGGAGA GATGTGAGTCAATTCAGCCACATCTATCAGGAGGAGCATTTTATTAATTATCTTACTCCTGATATTCGGATAGTGAAGGAACTGCCTAAGGAGTTGCAGT CGCTGGATTTGGAGGCAATTGGTAGCACTGTGACAGATGTAGATGTCCCCAAAGAATCAGAGCCAAGTTTTTATTTGAAAAGCATTCTCCCTATATTACT GAAAAATAGAGTAGTCCATTTTGTTGGATTTGGGAATCGCTTGGCATTTGATCCAATACCTTTTCAGTTGCAGAGACTTCGATGCAGATGTAATTTTCAT GCACTGCAATTTGTTCCCAAGATACAAGAAACTGGCGCCTTGCTCCTTCAAAGGCTGCGTAAACATGCTACCCATCCAGGGTCACTGGATCATTATCTTA CTGGTCCTTTTGCAGAACCAAATCTGAAAGGAAAAGTGGGTCATGCAGTCAAAGCTTCAAGATATCTAGCTATTCATCTGAGGTTTGAAATTGACATGTT AGCACACTCTTTGTGTGAATATGGTGGAGGAGAAGAGGAGAGGAAAGAGTTGGAAGCATATCGTGAGATTCATTTCCCTGCGTTGACACATCTTAAGAAG ACAACTGAGCTACGTTCTCCTGCATTGCTCAGGTCAGAAGGCTTATGTCCCTTAACACCTGAGGAAGCAGTACTTATGCTCGCGGCTCTAGGCTTCCGTC GGAAGACACATATGTTCATAGCGGGTGCAAATATATATGGAGGGAGATCACGGTTAACTGCTTTAACCAGCTTGTATCCTAATTTAGTTACTAAAGAGAA ACTGCTTTCAGCTACTGAACTCAAACCCTTCATGAATTTTTCATCTCAGCTTGCAGCATTGGACTTCATAGCCTGCACTGCTTCTGATGCATTTGCCATG ACAGACTCCGGGAGTCAGTTGTCATCTTTGGTTTCTGGTTTTCGAATCTACTATGGTGGAGGGAAGATGCCAACAATACGGCCAAACAAGCGGAGACTTG CTGACATTTTCATGAAGAACAACACCATAGAATGGAAGATATTCGAGCAGAGAGTTAGGAAGGCAGTTAGACAAACTAAACATGTCTTTGAAAGGCCCAA GGCAAGGAGTGTTTACAGATATCCACGGTGTAAAGAGTGTATGTGTCTAACAGAATAA
AA sequence Show only first row Show all	>Potri.004G005100.2 pacid=42796055 polypeptide=Potri.004G005100.2.p locus=Potri.004G005100 ID=Potri.004G005100.2.v4.1 annot-version=v4.1 MSPSADLSNQHSLPTHSPRLEQKKWKRKRERGKVVWYRKKQFKGILGLVCLVGLFFIFNGFMLLRLQLDDETSGNKDMSVQNSPSISVSIKDGLKKIGKG KMPRKDTYDRMLALAAHSLAKNKQEPKDLWQEPFVPASAWRPCADHRDWNPSEGNNGYILVTANGGMNQQRVAVCNAVVLARLLNSSLVIPRFMYSSVWR DVSQFSHIYQEEHFINYLTPDIRIVKELPKELQSLDLEAIGSTVTDVDVPKESEPSFYLKSILPILLKNRVVHFVGFGNRLAFDPIPFQLQRLRCRCNFH ALQFVPKIQETGALLLQRLRKHATHPGSLDHYLTGPFAEPNLKGKVGHAVKASRYLAIHLRFEIDMLAHSLCEYGGGEEERKELEAYREIHFPALTHLKK TTELRSPALLRSEGLCPLTPEEAVLMLAALGFRRKTHMFIAGANIYGGRSRLTALTSLYPNLVTKEKLLSATELKPFMNFSSQLAALDFIACTASDAFAM TDSGSQLSSLVSGFRIYYGGGKMPTIRPNKRRLADIFMKNNTIEWKIFEQRVRKAVRQTKHVFERPKARSVYRYPRCKECMCLTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62330			O-fucosyltransferase family pr...		Potri.004G005100 [exp]	0	1
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Potri.012G129300 [exp]	18.24	0.8307
AT1G14320		RPL10A, RPL10, ...	SUPPRESSOR OF ACAULIS 52, ribo...		Potri.013G159301 [exp]	21.35	0.8393
AT1G67420			Zn-dependent exopeptidases sup...		Potri.008G175400 [exp]	28.98	0.8381
AT1G75280			NmrA-like negative transcripti...		Potri.005G228700 [exp]	46.30	0.8200	PCBER7
AT5G08391			Protein of unknown function (D...		Potri.001G057900 [exp]	50.47	0.7640
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Potri.002G081900 [exp]	54.74	0.8079
AT1G23230			unknown protein		Potri.010G108350 [exp]	56.68	0.8131
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Potri.014G072800 [exp]	72.69	0.8095
					Potri.003G024966 [exp]	77.14	0.7826
					Potri.011G073216 [exp]	109.11	0.7990

Compare expression of checked genes

Potri.004G005100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.