Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22130 906 / 0 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G53730 587 / 0 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 421 / 4e-138 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT2G20850 388 / 4e-124 SRF1 STRUBBELIG-receptor family 1 (.1) AT4G03390 384 / 1e-122 SRF3 STRUBBELIG-receptor family 3 (.1) AT1G78980 373 / 3e-119 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 325 / 5e-101 SRF4 STRUBBELIG-receptor family 4 (.1) AT1G11130 323 / 2e-99 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT5G02800 286 / 9e-90 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G06820 294 / 8e-89 SRF2 STRUBBELIG-receptor family 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G010500 [exp] 1188 / 0 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.006G190700 [exp] 499 / 1e-167 AT5G06820 696 / 0.0 STRUBBELIG-receptor family 2 (.1) Potri.003G073700 [exp] 446 / 2e-147 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.019G103900 [exp] 405 / 2e-130 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.014G001200 [exp] 397 / 1e-128 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.013G144600 [exp] 389 / 2e-124 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.007G002600 [exp] 384 / 1e-123 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.004G037000 [exp] 361 / 3e-114 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 357 / 9e-113 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015549 [exp] 980 / 0 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 979 / 0 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10003926 [exp] 448 / 7e-148 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10031628 [exp] 390 / 2e-124 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10039795 [exp] 389 / 2e-124 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033711 [exp] 375 / 2e-119 AT4G03390 825 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018563 [exp] 370 / 3e-118 AT4G03390 773 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033333 [exp] 370 / 5e-118 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10034790 [exp] 367 / 3e-117 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10018459 [exp] 355 / 2e-112 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G005301.1 pacid=42795372 polypeptide=Potri.004G005301.1.p locus=Potri.004G005301 ID=Potri.004G005301.1.v4.1 annot-version=v4.1 ATGACATTGAAGCACTTTGAGTTATTTTTGTTTGTGTCTGTGATTAAAGTCTTGATCTTTGGTTTCCCAGTTCTTGTTCAATGTACTACTGATGCTAATG ATGTTCAAGCTCTACAAGTTATGTACACTTCGCTGAATAGTCCTTCACAGCTAACCACTTGGAAAAGTAATGGTGGGGATCCATGTGCAGAGTCATGGAA AGGGATCACTTGTGAAGGATCAGCTGTTGTTTCCATTCAGATTTCTGGGTTAGGACTTGACGGGACAATGGGATACTTGCTTGCAAACCTCATGTCATTG AGAACATTAGATCTAAGTGACAACCACCTTCGTGATTCATTCCCATATCAGTTACCACCGAATCTTACAAGCTTAAATCTCGCCAAGAACAACTTGAGTG GGAATATTCCTTATTCAATGTCTAGCATGGTTTCTCTTAGTTATCTAAACATAAGCCGCAATTCACTCGCCCAATCAATTGGAGATGTTTTCCTTAATCT TTCTCTCCTCGCAACCATGGATCTCTCTTTCAACAGCTTTAGTGGAGATCTTCCCAGTTCTTTTAATTCGTTGTCCAATCTTTCTACACTCAATGTTCAG AACAATCAACTGACTGGCTCTCTTAATGTTCTTACTGGTTTGCCTTTGACAACTCTAAATGTTGCAAACAATAACTTTAGTGGATGGATACCTCAAGAGC TTAGTTCAATCCCAAACTTTATATACGATGGAAATTCTTTTGACAATGGTCCTTCTCCACCTCCGCCACCATATACCCCACCACCTCCTGGTAAATCTCA CAGAAACCGTACTCATCCAGGATCTGGTGCGCCTGTCACCCCTTCTTCTGATGGTCAACCATCACAGTCAGATAAGGGAATTTCAGTGGGAGCTATTGTA GGTGTAGCCCTGGGTTCTCTTGTTCTGGTTCTCATTGTACTACTTGCTCTTGTCTTTTGCATTAAGAAGCACAAAAGCAAGGAAATTGGTCCTCTAGCTA CCCGGGGAAGTCGTCCTGCTGATACAGATGACATTGATAGAGATATGCAAGAGTCAAGGGTGAAAAACATGGCTGCTGTTACGGATCTGAAGCCCCCACC TGCAGAGAAATTGGTGGTTGAGAGATTACAAGGGAATTCTGGATCCATAAAAAGAATGAAGTCGCCCATCACTGCCACTTCATATAGTGTTGCTTCTCTA CAAACAGCAACAAATAGCTTTAGTCAAGAGTTTCTAATTGGTGAAGGTTCTCTTGGTCGTGTTTACAGAGGAGAGTTTCCTAATGGAAAGATGATGGCTG TTAAGAAGATCGACAATGCAGCATTGTCATTACAGGAGGAAGACAACTTTCTTGAAGCTGTTTCAAATATGTCACACTTGAGGCACCCAAACATTGTTTC CCTAGTAGGATACTGTGTGGAGCATGGGCAGCGACTCTTGGTTTATGAATATATAGCAAATGGGAGTGTGCATGATATACTGCACTTTGCTGATGATGGC AGCAAGACATTATCTTGGAATGCACGTGTTAGAGTAGCACTTGGCACTGCCCGTGCTTTAGAGTACTTGCATGAAGTCTGCTTGCCTTCTGTTGTACATA GAAACTTGAAGTCGGCAAATATTTTACTTGATGAAGAACTTAATCCCCACTTGTCAGACTGTGGTTTGGCTGCTCTGACACCAAACACAGAGAGACAGGT TTCAACACAGATGGTTGGCTCATTTGGTTATAGTGCTCCTGAATTTGCTCTGTCAGGAATATACACTGTAAAAAGCGATGTCTACAGCTTTGGGGTGGTA ATGCTAGAGCTATTGACTGGTCGGAAGCCACTTGACAGTTCGAGGGTGAGATCAGAGCAGTCACTTGTTAGATGGGCTACTCCTCAACTGCATGATATTG ATGCCTTGGCAAAAATGGTTGATCCTATCTTAAATGGCATGTATCCTGCAAAGTCTCTTTCACGTTTCGCTGACATCATTGCCCTCTGTGTCCAGCCGGA ACCTGAGTTTCGCCCTCCCATGTCTGAAGTTGTGCAAGCATTAGTACGACTAGTGCAAAGGGCCAGTGTGGTCAAGAGGCGATCCAGTGACGAGTCAGGA TTTGCATATAGAACCCCCGATCATGAGGCAATAGATTCATCATTTTGA
AA sequence Show only first row Show all	>Potri.004G005301.1 pacid=42795372 polypeptide=Potri.004G005301.1.p locus=Potri.004G005301 ID=Potri.004G005301.1.v4.1 annot-version=v4.1 MTLKHFELFLFVSVIKVLIFGFPVLVQCTTDANDVQALQVMYTSLNSPSQLTTWKSNGGDPCAESWKGITCEGSAVVSIQISGLGLDGTMGYLLANLMSL RTLDLSDNHLRDSFPYQLPPNLTSLNLAKNNLSGNIPYSMSSMVSLSYLNISRNSLAQSIGDVFLNLSLLATMDLSFNSFSGDLPSSFNSLSNLSTLNVQ NNQLTGSLNVLTGLPLTTLNVANNNFSGWIPQELSSIPNFIYDGNSFDNGPSPPPPPYTPPPPGKSHRNRTHPGSGAPVTPSSDGQPSQSDKGISVGAIV GVALGSLVLVLIVLLALVFCIKKHKSKEIGPLATRGSRPADTDDIDRDMQESRVKNMAAVTDLKPPPAEKLVVERLQGNSGSIKRMKSPITATSYSVASL QTATNSFSQEFLIGEGSLGRVYRGEFPNGKMMAVKKIDNAALSLQEEDNFLEAVSNMSHLRHPNIVSLVGYCVEHGQRLLVYEYIANGSVHDILHFADDG SKTLSWNARVRVALGTARALEYLHEVCLPSVVHRNLKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVV MLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPILNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRSSDESG FAYRTPDHEAIDSSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Potri.004G005301 [exp]	0	1
AT1G38131			O-fucosyltransferase family pr...		Potri.005G173500 [exp]	6.92	0.7749
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.001G095600 [exp]	13.52	0.6510
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.018G029400 [exp]	20.78	0.6844	Pt-CESA1.2
AT4G28760			Protein of unknown function (D...		Potri.002G253600 [exp]	21.49	0.7419
AT3G26700			Protein kinase superfamily pro...		Potri.002G237600 [exp]	21.90	0.6521
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079200 [exp]	22.04	0.7203
AT1G62870			unknown protein		Potri.003G115900 [exp]	22.24	0.7148
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.016G054900 [exp]	25.45	0.7550	Pt-CESA4.2
AT5G26670			Pectinacetylesterase family pr...		Potri.010G004400 [exp]	25.45	0.7038
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Potri.012G082100 [exp]	26.83	0.6350

Compare expression of checked genes

Potri.004G005301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.