Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04320 701 / 0 malonyl-CoA decarboxylase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G010400 [exp] 912 / 0 AT4G04320 699 / 0.0 malonyl-CoA decarboxylase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020031 [exp] 619 / 0 AT4G04320 575 / 0.0 malonyl-CoA decarboxylase family protein (.1.2) Lus10015550 [exp] 164 / 1e-46 AT4G04320 158 / 3e-45 malonyl-CoA decarboxylase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [poplar] [flax] Acetyltrans PF05292 [poplar] [flax] MCD Malonyl-CoA decarboxylase C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G005500.7 pacid=42796709 polypeptide=Potri.004G005500.7.p locus=Potri.004G005500 ID=Potri.004G005500.7.v4.1 annot-version=v4.1 ATGAACAAGAAAGGGTTATCGATTTTAATGCGAGCTAAAATGAGACCCAATAATGACCCATCAAAGCTCTCTCCTTTCTCGCCTACTCTATCTAATGGGA TTAACCAAATGATGACTGATCCTCCAAGAAATCAACGGTCTACTGATGATTCACGCAGCAACTTCAGTGCTTCTGGGAATCATTACGAGAGGAATTTTGA TATAGTGAAGGACTCCATGGGCTTGGCGATATCGCTGAACAAAACTGAATCTTTGGATGTTGTACTTGATGATTTCTCACAGGGTTATTTTAGTCTTTCG AATGAAAATCGGAAGAAATTGGTGATTGTGCTTGCCAAAGAGTATGATCTTAATAGGATTCAAGTTCGTGAATTATTGAAGCAATATCTTGGACTTGAGC TTCGTAGTGGTAATGAAGGTGAATTGAGTAATGTTGATGACGAGAACATGTTTTCTGCTTTTTATCGGATTGAGAGAAACTTGAGACAAGCTCTTAAGCC AACGTACAATGTTCTTTTTGAACGACTTAATAACTATACTGGGGGATTGAAGTTCTTGTCACTTCTTCGAGCGGATATTTTGTCTTTTCTTGGAGAGGAA AATATTGCCTTGTTGCGAGCATTAGATTCCTGCTTAAAGGAGAAACTTAGTACTTGGCTTAGTCCAGCTGTGTTGGAGCTTCATCAGATTACGTGGGATG ATTCTGCTTCTTTGCTGGAGAAAATTGTGACTTATGAGGCAGTGCATCCAATCAGCAATCTTTTGGATCTTAAAAGAAGGTTGGGTGTTGGCCGCCGTTG TTTTGGATATTTCCATCCAGCAATACCAGGCGAGCCCCTTATTTTCATAGAAGTTGCACTTCTGAAGAATGTGGCTCAGACAATACAGGAAGTTTTGTTG GATGTTCCTCCCATACCTGAACATGAGGCTGCTTGTGCATTATTTTATTCTATATCGTCAACTCAGCCTGGCTTGGCAGGGATCAATCTAGGGAAGTTTC TTATTAAACGCATGATTACATTGGTGAAAAGAGATATGCCACAAATATCTACATTTGCAACTCTAAGCCCAATCCCCGGATTCATGCAATGGTTGCTATC TAAGTTGGCATCTCAATCAGTAATTGCTAAAGTTGACAACATGGAACAACCAACAGGTGGATCTGGCTCCACTTTTCAGGAGAACTTACTCGAACCTGAT GAAGAAAGAATGCTTTTGAATTCTGCTCTGGAGACTTATGCTGGAAAAAATGGCATGGAAGTGATGCTAAACTTGCTGACATCCAAAAACTATGAGTGGA CCAGTTCAGCCGAATTACTTTCTGCCTTGAAGCCCCCTCTAATGCGGCTGTGTGCCAGGTACCTTCTCCAAGAGAAGAAGAGAGGAAAAGCTCTAGATTC CGTGGCAAATTTTCACTTGCAAAATGGAGCGATGGTTGAAAGATTAAATTGGATGGCAGACCGGTCAGAGAGAGGACTTCGTCAAAGTGGAGGTATCATG GTGAACTACGTGTACAGGGTCGAGTGCATAGAACAATATGCTCAATCATATTTCAGCACTGGGCATATACATGCTTCAAGTGATATTCGCTACTATATCA TGGCACAGAAGGAACCTGAGGAGACCACCACAGCTTAA
AA sequence Show only first row Show all	>Potri.004G005500.7 pacid=42796709 polypeptide=Potri.004G005500.7.p locus=Potri.004G005500 ID=Potri.004G005500.7.v4.1 annot-version=v4.1 MNKKGLSILMRAKMRPNNDPSKLSPFSPTLSNGINQMMTDPPRNQRSTDDSRSNFSASGNHYERNFDIVKDSMGLAISLNKTESLDVVLDDFSQGYFSLS NENRKKLVIVLAKEYDLNRIQVRELLKQYLGLELRSGNEGELSNVDDENMFSAFYRIERNLRQALKPTYNVLFERLNNYTGGLKFLSLLRADILSFLGEE NIALLRALDSCLKEKLSTWLSPAVLELHQITWDDSASLLEKIVTYEAVHPISNLLDLKRRLGVGRRCFGYFHPAIPGEPLIFIEVALLKNVAQTIQEVLL DVPPIPEHEAACALFYSISSTQPGLAGINLGKFLIKRMITLVKRDMPQISTFATLSPIPGFMQWLLSKLASQSVIAKVDNMEQPTGGSGSTFQENLLEPD EERMLLNSALETYAGKNGMEVMLNLLTSKNYEWTSSAELLSALKPPLMRLCARYLLQEKKRGKALDSVANFHLQNGAMVERLNWMADRSERGLRQSGGIM VNYVYRVECIEQYAQSYFSTGHIHASSDIRYYIMAQKEPEETTTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04320			malonyl-CoA decarboxylase fami...		Potri.004G005500 [exp]	0	1
AT3G30841			Cofactor-independent phosphogl...		Potri.004G106200 [exp]	1.00	0.7064
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Potri.006G083300 [exp]	6.92	0.6260
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.009G078600 [exp]	12.44	0.5727	ALDH6.4
AT3G24570			Peroxisomal membrane 22 kDa (M...		Potri.018G037100 [exp]	13.19	0.6714
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Potri.017G026100 [exp]	16.43	0.6583
AT1G22750			unknown protein		Potri.005G198600 [exp]	19.89	0.6161
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Potri.001G130200 [exp]	22.44	0.6656
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.010G158100 [exp]	35.63	0.6226
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Potri.014G043700 [exp]	36.66	0.5763
AT3G44160			Outer membrane OMP85 family pr...		Potri.001G215500 [exp]	37.62	0.6050

Compare expression of checked genes

Potri.004G005500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.