Plant FIBer expression Database

Potri.004G005700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63520 419 / 1e-141 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G010200
[exp]
833 / 0 AT5G63520 427 / 3e-145 unknown protein
Potri.011G010100
[exp]
810 / 0 AT5G63520 394 / 2e-132 unknown protein
Potri.012G100500
[exp]
772 / 0 AT5G63520 425 / 3e-144 unknown protein
Potri.015G098700
[exp]
755 / 0 AT5G63520 426 / 6e-145 unknown protein
Potri.012G100600
[exp]
406 / 8e-137 AT5G63520 294 / 3e-93 unknown protein
Potri.015G098800
[exp]
401 / 1e-134 AT5G63520 282 / 1e-88 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042637
[exp]
43 / 0.0002 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08495 FIST FIST N domain
PF10442 FIST_C FIST C domain
Representative CDS sequence
>Potri.004G005700.1 pacid=42795570 polypeptide=Potri.004G005700.1.p locus=Potri.004G005700 ID=Potri.004G005700.1.v4.1 annot-version=v4.1
ATGATATCAACAACAATGGAGGAAAAACCAAAAGAAGCTAAAACGCCAATGACAGGCTTTGCGTCAATAAACGAAGACCTTTTCCAAAACATACTCAAAC
GAATACCAGCTTTATCCTTTGCATCAGCAGCTTGTGTAAGCAAATCATGGAGCCGAAATTGCAATCAAATCCTCTATAAACCAAAGCTTGCCTCCGCTTT
TTCTCTGAATCCAGTCCAAAAGGTTGCATTAGAAGAGGTTGTCAATAAGGTTCTCTCTGAGCCAATTAGACCCCAGTTTGCCATTGCAAATGTTATTGGG
AGTGGGGTTGATTTGAGTGGAATACTCGATTTTTTAGCAGCAAAACTTGGTTCCAAAACTCCAATTATTGTGTCTTGTGCTGGTGGAATCATGGGAAGAG
ATGCTGTTACTGATGAATATAAAGAGGTTATGATAGAAGATTTTTGGGTTGATGGTGCATCAAACTCAAGCTTTGGTATCATGTTGGCTGTGGGATTTTT
ACCAGGACTAAAAGTTGATGCCATCCCGCTGCTACGACCAAGAAAGGCACAGGGAGTGGCAATGGTTGATAAGTTCGTGATGGATATTAGGAATTATGCA
GCTTTAGTATCTGATTCCACATCACCGAGTCTGATTATAATGTTTGGAAGCGAAAAAACTGACCAGAAACCTGTAATGGAAAAGCTGGATCATGCCATGT
CGAGGGAAACAATTGTTGTCGGCGACGAGAGAGCTCAATTCCTGTACAGAAGTGGCATAGAGTCAAGAAATGTCTATTATGGGAGCGTCGATCAATATTT
TTCTGATGCAGTTGCTCTTGTATTTGCAAGGGATCAAAACAGGCCTTCTGGCACAGGGGAAATCCATTTCCATTCTGCATTATCAAGTGGTGTTTCTGCA
ATAGGTCCAAGGTTCAAGGCAGTTTCTGCCAATGAGATTGAATCTGAGACAGGTCTTAGTACATGGCTTTCTGTCAGAAGAGAAGGAGGACAAGAGATTC
TAGGTGGTCAGAGGATTATAGATGACATCAACAATGAGTTGGGGAACCAAACTAAACTGTTCATTGGAGTTTCTGAACAAAGAAAATGCTTTGTTGGGCC
AGAGAAGCCAAGACAGATGAGATCTCTAGCTTTCCATGAAGTTATGGGTGGAGATGTAGAGCACCTTTTTGTGGATGGAGTCGGCATAAAAACTGGAGAC
TACTTTCATCTTTACCATCCAGATCCAAGCGCCGCATTATCTTCTTGTAGTAATATCTCCAAGAATTTCAGAAACCTGAAGCTAGATTGGAGTTTTAGAA
GCTGCCAGCTTCATGCAGCTAGGGGTGTTGGTGAAAAGGAAGTTATTGGAGGTTTCGTTTTCGCTTGTTGGGGCCGTGGTGAGTCATTCTTTGGGCACAG
CAATGTTGATAGCTCACCATTCTTGGATAACTTTCCTGGGGTCCCAATGGCAGGGATATTTACTTATGGGGAAATCGGACGGGGCTTTTCAATCTTGAAT
ACAGATTTTGAATCAGGCCAAGAAGATAAGACTTTGTGTTTCTGTGTACATGTTTATAGCACTGTATATTTGTTGGTGTCTTATACTCCGGCACCTATAG
AGCATTAG
AA sequence
>Potri.004G005700.1 pacid=42795570 polypeptide=Potri.004G005700.1.p locus=Potri.004G005700 ID=Potri.004G005700.1.v4.1 annot-version=v4.1
MISTTMEEKPKEAKTPMTGFASINEDLFQNILKRIPALSFASAACVSKSWSRNCNQILYKPKLASAFSLNPVQKVALEEVVNKVLSEPIRPQFAIANVIG
SGVDLSGILDFLAAKLGSKTPIIVSCAGGIMGRDAVTDEYKEVMIEDFWVDGASNSSFGIMLAVGFLPGLKVDAIPLLRPRKAQGVAMVDKFVMDIRNYA
ALVSDSTSPSLIIMFGSEKTDQKPVMEKLDHAMSRETIVVGDERAQFLYRSGIESRNVYYGSVDQYFSDAVALVFARDQNRPSGTGEIHFHSALSSGVSA
IGPRFKAVSANEIESETGLSTWLSVRREGGQEILGGQRIIDDINNELGNQTKLFIGVSEQRKCFVGPEKPRQMRSLAFHEVMGGDVEHLFVDGVGIKTGD
YFHLYHPDPSAALSSCSNISKNFRNLKLDWSFRSCQLHAARGVGEKEVIGGFVFACWGRGESFFGHSNVDSSPFLDNFPGVPMAGIFTYGEIGRGFSILN
TDFESGQEDKTLCFCVHVYSTVYLLVSYTPAPIEH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63520 unknown protein Potri.004G005700
[exp]
0 1
AT4G37340 CYP81D3 "cytochrome P450, family 81, s... Potri.002G121200
[exp]
3.16 0.9606 Pt-IFS1.43
AT1G66910 Protein kinase superfamily pro... Potri.015G018101
[exp]
4.24 0.9673
AT1G11330 S-locus lectin protein kinase ... Potri.011G039400
[exp]
5.19 0.9577
AT3G50770 CML41 calmodulin-like 41 (.1) Potri.005G128100
[exp]
6.00 0.9538
AT5G66580 unknown protein Potri.018G143700
[exp]
8.66 0.9347
AT2G25470 AtRLP21 receptor like protein 21 (.1) Potri.018G145512
[exp]
10.58 0.9479
AT1G18140 LAC1, ATLAC1 laccase 1 (.1) Potri.015G040700
[exp]
11.00 0.9446
AT1G11330 S-locus lectin protein kinase ... Potri.011G039300
[exp]
11.40 0.9415
AT1G68040 S-adenosyl-L-methionine-depend... Potri.019G016112
[exp]
14.24 0.9529
AT1G07390 AtRLP1 receptor like protein 1 (.1.2.... Potri.018G144600
[exp]
15.29 0.9475

Potri.004G005700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.