Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22120 1139 / 0 ERD (early-responsive to dehydration stress) family protein AT4G04340 1106 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT1G11960 1085 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT1G62320 1051 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT3G21620 1034 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 971 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT4G02900 970 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT1G32090 837 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT3G01100 367 / 4e-116 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 343 / 6e-107 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G005900 [exp] 1339 / 0 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.011G009900 [exp] 1300 / 0 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006100 [exp] 1194 / 0 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.014G156100 [exp] 1117 / 0 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.002G226800 [exp] 1108 / 0 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.001G133800 [exp] 860 / 0 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.003G099800 [exp] 858 / 0 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.010G164100 [exp] 382 / 5e-122 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.004G115800 [exp] 377 / 7e-120 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020032 [exp] 1139 / 0 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10015551 [exp] 1134 / 0 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10030024 [exp] 1085 / 0 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10035300 [exp] 1080 / 0 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002996 [exp] 1059 / 0 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10024477 [exp] 1044 / 0 AT1G11960 1072 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10028000 [exp] 978 / 0 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10000660 [exp] 978 / 0 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002133 [exp] 884 / 0 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10030431 [exp] 364 / 6e-115 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [poplar] [flax] Anoctamin-like PF02714 [poplar] [flax] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate CL0416 [poplar] [flax] PF13967 [poplar] [flax] RSN1_TM Late exocytosis, associated with Golgi transport CL0221 [poplar] [flax] RRM PF14703 [poplar] [flax] PHM7_cyt Cytosolic domain of 10TM putative phosphate transporter
Representative CDS sequence Show only first row Show all	>Potri.004G006000.4 pacid=42794704 polypeptide=Potri.004G006000.4.p locus=Potri.004G006000 ID=Potri.004G006000.4.v4.1 annot-version=v4.1 ATGGCAACGCTCGCAGATATAACGGTTTCCGGAGCTATAAATGTACTGAGTGCATTCATTTTCTTATTGGCGTTTGCAATTTTGAGGCTACAACCTCTCA ATGATAGAGTTTACTTTCCAAAATGGTATCTGAAGGGCGTAAGAGGCAGCCCCTCGCGCTCTGGGGCGCTTGTTCGTAGGGTTGTGAATTTAGACTTTAG GTCATATATCCGGTTTTTAAATTGGATGCCGGAAGCGCTTAAAATGCCGGAGCCTGAGCTTATTGATCATGCAGGATTGGATTATGCTGTTTACTTGCGC ATTTACTTGATGGGACTTAAGATTTTTGTACCTATAACAATCCTTGCTTTGGCTATCCTGGTGCCAGTCAACTACACCAATAATGCTCTAGAGGCAGTCA AGATGGTGGCCAACGTGACTGCTAGTGACATTGACAAGCTTTCAATTTCGAATATACCACTTAAATCACAAAGATTTTGGACGCATATAGTGATGGCTTA TGCCTTTACTTTCTGGACATGCTATGTGTTGCTTAGGGAGTATGAGAAAGTTGCTTCAATGAGGTTGCAATTTCTTTCCTTGGAAAGACGTCGTCTAGAT CAATTCACAGTCCTTGTTAGGAATGTACCTCCTGATCCAGATGAAACTGTCAGTGAGCTCTTGGAGCACTTTTTTCTAGTGAATCACCCAGATCATTACC TCACTCATCAGGTGGTGTGCAATGCCAACAAACTAGCCAGCTTGGTCAAGAAGAAGAAAAAAAAGCAGAACTGGCTTGACTACTACCAACTCAAGTACTC CAGGAATCAATCGCAGAGGCCTCAGATGAAGACTGGTTTCCTTGGGCATTTTGGGGGAAAAGTGGATGCAATCGATCATCACATATCAGAGATTGAGGAA CTGTCAAAAGAAATAGAAGAAGAGAGGACAAGGGTATTAAAGGATCCAAAGTCTATCATGCCAGCAGCATTTGTTTCATTCAAGACTCGATGGGGTGCAG CTGTCTGTGCACAAACTCAACAATCAAGAAATCCGACTTTGTGGTTAACAGAGTGGGCTCCGGAGCCACGCGATGTATATTGGCAAAACTTAGCCATTCC GTACATGTCACTCAAAGTTAGGAGGCTGATAATTGGAGTTGCATTCCTTTTACTTACCTTCTTTTTCATAATACCTATTGCATCTGTACAAGCTCTAGCA AGTATCGAGGGAATAGAGAAGAGAGCCCCTTTTCTGAAGTCTGTTATTGAAATAAAATTTATCAAATCTGTTATCCAAGGTTTTCTTCCTGGCATTGTGT TGAAGCTCTTCCTTATCTTCCTGCCAACAATATTGATGATCATGTCTAAATTTGAAGGCTTCATATCTCTATCATCTTTGGAAAGGAGATCAGCAACAAG AAATTATATTTTCCTCGTTATCAATGTATTCCTTGGGAGCATACTCACTGGAGCTGCATTTGAACAGCTAAATTCTTTTATTAAGCAGTCTGCTAACGAA ATTCCTAAAACAATTGGTGTAGCTGTTCCAATGAAAGCAACTTTCTTCATAACCTATATAATGGTTGATGGATGGGCTGGGATTGCTGGGGAAGTTTTAA TGTTGAAACCACTGATATTCTACCACTTGAAAAATTTCCTTTTGGTGAAGACTGAAAAAGACAGGGAAGAGGCAATGGATCCTGGAAGTCTTGGTTTTCA CACTGGCGAACCCCGTATACAATTATATTTTCTGCTAGGGCTTGTATATGCAACAGTGACACCAGTTCTCCTTCCATTCATAGTTATTTTCTTCGCCTTC GCCTATTTAGTGTTCCGTCATCAGATCATAAATGTTTACAACCACGAGTATGAAAGTGGTGCAGCATTCTGGCCTGATGTCCACGGGCGTATTATTACTG GGCTAGTAATCTCACAGCTGGCTCTGATGGGATTACTGAGTACAAAAGAAGCTGCACAGTCAACACCATTTCTCGTTGCTCTCCCTGTCCTCACTATATG GTTTCATAGGTTCTGCAATGGACGCCACAAATCTGCATTTGTCAAATATCCATTACAGGAAGCAATGATGAAAGATACCCTGGAACGAGCAAGGGATCCA AACTTTAATCTGAAAGCTTGCCTTCATAGTGCATATGTTCATCCAATTTTCAAAGGTGACGATGATGATGAAGACGACCTGAGCGTAGAGATGGAAACTG AGAGTGTCTTAGTGCCTACAAAACGCCAATCGCAAAGAAATACACCAGTACCAAGCAAAATCAGTGGGGGATACTCACCATCTTTGCCGGAGGCAGTTAA AAATGGAGAGCTCTGA
AA sequence Show only first row Show all	>Potri.004G006000.4 pacid=42794704 polypeptide=Potri.004G006000.4.p locus=Potri.004G006000 ID=Potri.004G006000.4.v4.1 annot-version=v4.1 MATLADITVSGAINVLSAFIFLLAFAILRLQPLNDRVYFPKWYLKGVRGSPSRSGALVRRVVNLDFRSYIRFLNWMPEALKMPEPELIDHAGLDYAVYLR IYLMGLKIFVPITILALAILVPVNYTNNALEAVKMVANVTASDIDKLSISNIPLKSQRFWTHIVMAYAFTFWTCYVLLREYEKVASMRLQFLSLERRRLD QFTVLVRNVPPDPDETVSELLEHFFLVNHPDHYLTHQVVCNANKLASLVKKKKKKQNWLDYYQLKYSRNQSQRPQMKTGFLGHFGGKVDAIDHHISEIEE LSKEIEEERTRVLKDPKSIMPAAFVSFKTRWGAAVCAQTQQSRNPTLWLTEWAPEPRDVYWQNLAIPYMSLKVRRLIIGVAFLLLTFFFIIPIASVQALA SIEGIEKRAPFLKSVIEIKFIKSVIQGFLPGIVLKLFLIFLPTILMIMSKFEGFISLSSLERRSATRNYIFLVINVFLGSILTGAAFEQLNSFIKQSANE IPKTIGVAVPMKATFFITYIMVDGWAGIAGEVLMLKPLIFYHLKNFLLVKTEKDREEAMDPGSLGFHTGEPRIQLYFLLGLVYATVTPVLLPFIVIFFAF AYLVFRHQIINVYNHEYESGAAFWPDVHGRIITGLVISQLALMGLLSTKEAAQSTPFLVALPVLTIWFHRFCNGRHKSAFVKYPLQEAMMKDTLERARDP NFNLKACLHSAYVHPIFKGDDDDEDDLSVEMETESVLVPTKRQSQRNTPVPSKISGGYSPSLPEAVKNGEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G006000 [exp]	0	1
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.009G075300 [exp]	2.23	0.9113
AT2G04850			Auxin-responsive family protei...		Potri.014G161700 [exp]	2.82	0.9051
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.001G403700 [exp]	5.29	0.8808	Pt-CIP7.2
AT5G57830			Protein of unknown function, D...		Potri.018G103500 [exp]	8.00	0.8258
AT2G20650			RING/U-box superfamily protein...		Potri.017G012600 [exp]	8.30	0.9043
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.011G122900 [exp]	8.94	0.8869	Pt-CIP7.1
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.016G051900 [exp]	10.39	0.9031
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Potri.009G002400 [exp]	11.83	0.8619
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.007G109000 [exp]	15.87	0.8270
AT3G01810			unknown protein		Potri.001G333200 [exp]	17.14	0.8824

Compare expression of checked genes

Potri.004G006000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.